Methanosarcina mazei S-6: MSMAS_2808
Help
Entry
MSMAS_2808 CDS
T04532
Name
(GenBank) exosome complex RNA-binding protein Csl4
KO
K07573
exosome complex component CSL4
Organism
mmj
Methanosarcina mazei S-6
Pathway
mmj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSMAS_2808
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmj03019
]
MSMAS_2808
Messenger RNA biogenesis [BR:
mmj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
MSMAS_2808
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
MSMAS_2808
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
EXOSC1
ECR1_N_2
HypA
S1_RRP5
OB_RRP5_4th
zf-C3HC4_3
Motif
Other DBs
NCBI-ProteinID:
AKB66004
UniProt:
A0A0E3RKC6
LinkDB
All DBs
Position
complement(3494444..3495394)
Genome browser
AA seq
316 aa
AA seq
DB search
MIRIRKNKTTRKKLTGPGEGKNGAEKSAPSNEESRDQFKGQQKDQPRTQFKSQPREQSRD
QFKGQPRAQYKSQPRDQSRGQFRDQSRDQFKGSPDKKRKFPYSKKGPRDRKETPGFRPPT
AEAVVSEEDLEKGGFVLPGELVGTTEEFKSGNGTAVIAGDIYSTATGNVLIDRKARVVSV
KPNTITPNILKVGDVVYGRISDVRESGAMVEVAGIEGKENREIVSVRTGDIHVSSVRDSY
VKRLADEFRPSDIVRAKVVDVERMRLTTAEDSLGVVKAYCSNCKGELVLEGKKLKCPVCN
MTETRKISTEYGKGIR
NT seq
951 nt
NT seq
+upstream
nt +downstream
nt
atgattagaattcgaaaaaataagactaccaggaaaaaattaacaggtcctggtgaagga
aagaacggagctgagaaatcggctccttcaaatgaagaaagcagggatcaatttaagggt
cagcaaaaggatcagcccaggactcaatttaaaagccagcccagggagcagtcaagagac
cagtttaaaggtcagccccgagctcagtataagtctcagcccagagaccagtccagaggg
caattcagagaccagtcaagggaccagttcaaaggcagccctgataaaaagagaaaattc
ccatattccaagaaaggtcccagagatagaaaggaaactccgggtttcaggccccctacc
gcagaagccgttgtatctgaagaagatctcgaaaaaggaggctttgtacttcctggagaa
cttgtcggaactacagaagagttcaaatcgggcaatggaactgcagtaattgcaggagac
atctattccactgctacgggtaatgtgctcattgacagaaaagccagagtggtctcggta
aagccaaacacaattactccaaatatcctcaaagtaggagatgtcgtgtacgggcggata
tctgacgtccgtgagtccggggcaatggtggaagtcgcaggaattgaagggaaagaaaac
agggaaatcgttagtgtaaggaccggagatattcatgtctccagtgtgagagattcctat
gtgaagaggctggcagatgagttcaggccttctgacatagtaagagcaaaggtagttgac
gttgaaagaatgcgccttactacagctgaagattctcttggagttgtaaaagcttactgt
tcaaactgcaaaggagaacttgtgctggaagggaaaaagcttaaatgcccggtctgcaat
atgactgaaacccgcaagatctcaactgagtatgggaaagggatcaggtaa
DBGET
integrated database retrieval system
