Methanosarcina mazei S-6: MSMAS_2913
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Entry
MSMAS_2913 CDS
T04532
Name
(GenBank) Putative Zn-dependent hydrolase in polyisoprenoid biosynthetic cluster
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mmj
Methanosarcina mazei S-6
Pathway
mmj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSMAS_2913
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmj03019
]
MSMAS_2913
Messenger RNA biogenesis [BR:
mmj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MSMAS_2913
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Ortholog
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GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B_2
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AKB66109
UniProt:
A0A0E4FDU4
LinkDB
All DBs
Position
complement(3614654..3615997)
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AA seq
447 aa
AA seq
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MTEIGIVAVGGYNEMGRNMTAIIIGEDIVILDMGLRLDRVQIHEDVEIDKMHSLELIEMG
AIPDDTIMKEINGTVRAIVCTHGHLDHIGAIPKLAHRYNAPILATPYTAAIIRQQIESER
KFEVCNRVIPLQAGGTYQVTEDISIEFIRVQHSIIDCVLAAVHTPAGAVLYACDFKLDRT
PTMGEAPDFDRFKSLGKEGVIAMITESTNAGRSGKTPSEQIAKDMVRDVLLGTEESGVGM
IVTTFASHIARLKAIIEAAEEMGRIPVLMGRSMERYVGAARDIGYLDLPSNVEIYGTRKD
VDRAFKRIMQEGKNKYLPIVTGHQGEPGSILVRVANGETPYTIDPGDRIIFSANVIPSPM
TQANRYALETKLRMKGGRIYDDVHVSGHAYREDHWELLRMVNPEHVIPAHGDMEMHGHYI
EMAEDAGYVLGDTVHLLRNGEVLHIEE
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgactgaaataggtattgttgcagtcggcggctataatgaaatgggccgcaatatgact
gccataattataggtgaagatattgtcattcttgatatggggctcaggctcgacagggtc
cagatccatgaggacgttgagattgacaaaatgcattctcttgaactgatcgagatgggt
gcaattcctgatgatactatcatgaaagaaatcaacgggactgtgagggcgatcgtctgt
actcacgggcaccttgaccatataggtgcgattccgaagcttgcccacaggtataacgcc
cctatacttgctaccccctatactgcagctattatcaggcagcagatagagtccgagcgt
aagtttgaggtttgcaacagggttatccctctgcaggcaggcgggacctaccaggttacg
gaagatatttccatagagttcatcagggtccagcacagcattatcgactgtgtacttgca
gccgtacacactccggcaggtgctgtcctgtatgcctgtgacttcaagctggacaggact
ccgacaatgggagaagctcctgactttgaccgcttcaaatccctcgggaaggaaggggtt
attgcaatgatcacggagagcactaatgccgggcgctcaggcaagactccctcggaacag
atagcaaaagacatggtaagggatgtcctgctcggaactgaggaatcaggtgtcgggatg
attgttacaacctttgcttcccatattgccaggcttaaagcgattatcgaggctgccgaa
gagatgggcagaattcctgtgcttatgggccgctccatggaacgctatgtgggtgctgcc
agggacatcggttatcttgatcttccctcgaatgttgagatttacggtacaagaaaagat
gtcgacagggcatttaagcgcatcatgcaggaaggcaaaaacaaatacctgcctatcgtc
acaggacaccagggagagccgggttccattcttgtgagggtcgcaaacggggaaactccg
tatactattgaccccggggacaggattattttctctgcaaatgtaatcccgagcccgatg
actcaggctaaccgctacgcccttgagaccaaactcaggatgaagggcgggaggatctat
gatgatgtccatgtatcaggccacgcttatagggaagaccactgggagcttcttcgcatg
gtgaatcccgaacatgtgattcctgctcatggagacatggagatgcatgggcattacatc
gaaatggcagaagatgcggggtatgtactcggagataccgtacaccttctcagaaatggc
gaagtgttacatatagaggagtaa
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