Methanosarcina mazei S-6: MSMAS_3082
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Entry
MSMAS_3082 CDS
T04532
Name
(GenBank) DNA repair helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
mmj
Methanosarcina mazei S-6
Pathway
mmj03022
Basal transcription factors
mmj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mmj00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
MSMAS_3082
09124 Replication and repair
03420 Nucleotide excision repair
MSMAS_3082
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmj03021
]
MSMAS_3082
03036 Chromosome and associated proteins [BR:
mmj03036
]
MSMAS_3082
03400 DNA repair and recombination proteins [BR:
mmj03400
]
MSMAS_3082
Enzymes [BR:
mmj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
MSMAS_3082
Transcription machinery [BR:
mmj03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
MSMAS_3082
Chromosome and associated proteins [BR:
mmj03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
MSMAS_3082
DNA repair and recombination proteins [BR:
mmj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
MSMAS_3082
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
ResIII
DEAD
Zot
PhoH
HBB
nSTAND3
ATPase
Sigma54_activat
AAA_34
Motif
Other DBs
NCBI-ProteinID:
AKB66278
UniProt:
A0A0E3WND7
LinkDB
All DBs
Position
complement(3824486..3826825)
Genome browser
AA seq
779 aa
AA seq
DB search
MMQKNGYMRYFTKKSCYPNQSEAMDKIHSALQNEKIVLFEGACGTGKTLSALAPALHAGK
KLNKVVIIVTNVHQQMVQFINEARDINRDNSIKTIVFKGKASMCPDNLDYEECRLKGENT
YDLLDFEREVSSKEKELKDAFEKHKKSKDPALYILRNELEKELDEARKKAQSLRNHSCSR
LYEVLKFESSEFSSWLFSDVRSPEEIMEYAEDRGMCGYELLKKELKNTELLICNFHHVLS
ADIFMTLLKWLERDPEDVILIFDEAHNIEASARSHSSIMLSELTVEKALSEVGEIPEPES
SPVFGGGSFSGTGIPLDEDYASRIYARRLFSCLLTAIRDTYDSKLKFGERNRLGKHWQDI
QISDPYERHDVLKARFLRDAQKEGFADEETVLTRLREIGEFGGRLEEIYAENYKKGLLSV
PKRSQIRYVADFLSSYLVLSDRQNYYPILNMRRDFKSDRVVGRLELFTCIPKNVTQPLLD
SVYSAVLMSATLRPFEMVRSTLGISREVEEITYGTTFPQERRLTLAVSVPPLFAKNRDSP
ETLEGLREALLAATAASPGNVIIYFQSYAEALRYTKLLEPELSIPIFLDEVGVSAQEIRP
KFFKIGEQGGKAVLITYLWGTLSEGVDFRDSRGRTVIVVGVGYPALNDRIKAVESAYDTV
FGCGEGWEFAVQVPTIRKVRQAMGRVVRSPGDFGVRILLDARYQGSQVRKLGKFSVFGYF
PPEESREFIDVAPKDVGSLVEEFFANTLPYNPEKIETEKKEPESPASGRLEFGSLAEKL
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atgatgcaaaagaatggatacatgcgatattttacaaaaaaaagctgctacccaaatcag
tcagaggctatggataaaattcattctgccctccagaatgagaaaatagtgctctttgaa
ggggcatgcggtacgggcaagactttaagtgcacttgctcctgcactgcatgcgggaaag
aagctcaataaggtcgtaattatagtcacgaatgtccaccagcagatggtccagttcata
aatgaagcaagagacatcaacagggacaacagcataaaaacaatcgtttttaaaggtaaa
gcttcgatgtgccctgataatcttgactacgaggaatgcaggctcaaaggggaaaacacc
tatgaccttcttgattttgaaagggaggtctcttcaaaggaaaaagaactcaaagacgcc
ttcgaaaaacacaagaaatcaaaagatcctgccctttacatcctcaggaacgagctcgaa
aaagaactcgatgaagcccgaaaaaaggctcagtccttaaggaaccattcctgctccagg
ctttatgaagtcctcaagttcgaaagcagcgagttttcttcctggctcttttcggacgtc
aggagtccggaagaaattatggagtatgcagaagaccggggaatgtgcgggtatgagctg
cttaaaaaggaacttaaaaatactgagctccttatctgtaatttccatcatgtattaagt
gctgacatcttcatgaccctcctcaaatggcttgagagagaccctgaagacgtcatcctc
atctttgacgaagcccacaatatcgaggcttcagcacgttcccattcctcaataatgctt
tctgaactgaccgttgaaaaagccctttctgaagtgggagaaattcctgagcctgaaagc
tctcccgtattcgggggaggttcattctccggtacagggatccctcttgacgaagattac
gcttcaaggatttatgccagaaggctcttttcctgtcttcttaccgcaatcagggatact
tatgactcaaagctgaagttcggggaaaggaacaggcttggaaaacactggcaggatatc
cagataagcgacccctatgaacgccatgacgtcctgaaagcccgctttttgcgggacgca
cagaaggagggttttgcagacgaagaaacggttcttacaaggctgcgtgaaatcggggag
ttcggaggcaggcttgaagagatttatgctgagaactacaaaaaagggcttctttccgtg
cccaagcgttcccagatccgttatgttgcagatttcctttcttcttaccttgtgctttcg
gacaggcagaactattatccgatcctgaacatgcgcagggactttaaaagtgacagggtt
gtaggcaggcttgaactcttcacctgcatcccgaaaaatgtgacccagccattgcttgac
tccgtttattccgcggtgctaatgtctgccactctccgtcctttcgaaatggtcaggtcc
acactgggcattagccgggaagtggaggaaattacctatgggacaactttcccacaggaa
agaagactcactctcgcagtctcagttcctcccctctttgcaaaaaacagggacagccct
gagacccttgaaggtttgagagaggctcttcttgctgccactgctgcctcccccgggaat
gtaatcatttatttccagagctatgccgaagcactcagatatacgaaactccttgagcct
gaactctcaattcctattttccttgatgaggttggggtatcagctcaggagataaggccg
aagtttttcaaaataggggagcagggaggaaaagctgtgctcataacctacctctgggga
acattgagcgaaggagtagatttccgggactcccgcggcaggaccgtaattgtagtgggc
gtgggataccctgctctgaatgacaggataaaagctgtcgagtcggcatacgatactgtc
tttgggtgcggggaaggctgggaatttgcagtccaggtgcctacaataaggaaagtgagg
caggcaatgggaagggttgtccgctctccgggagattttggggtaaggattcttcttgac
gcccgctaccagggttctcaggtgcgaaaactggggaaattttctgtttttggatacttc
ccacctgaagaaagcagggaattcattgatgtagccccaaaagatgtaggaagcctggta
gaagagttcttcgcaaacacattgccttataatcccgaaaaaattgaaactgaaaaaaaa
gagccggaatctccggcttcaggccggctagagttcgggagccttgcagaaaaactctaa
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