Morganella morganii: MU9_2712
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Entry
MU9_2712 CDS
T02496
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mmk
Morganella morganii
Pathway
mmk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mmk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MU9_2712
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mmk03400
]
MU9_2712
Enzymes [BR:
mmk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MU9_2712
DNA repair and recombination proteins [BR:
mmk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MU9_2712
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AGG31757
UniProt:
M1SXN0
LinkDB
All DBs
Position
2943826..2947266
Genome browser
AA seq
1146 aa
AA seq
DB search
MSLKTRYELPARAADTRQLGEMTGAACAVETASIIEQHDGPVILVTRDMQNALRLRDEIR
QFTALPAETLADWETLPYDSFSPHQEIISNRLSTLYRLPTLEKGALILPVNTLMQKVCPP
EFLTSHALVMAKGEKLSRDKLREELVQGGYRSVEQVLEHGEFAIRGALLDLFPMGSELPF
RIDFFDDEIDSLRTFDVDTQRTLDEVNAINLLPAHEFPTDKDAIELFRSQWRETFEVRRD
PEHVYQQVSKGTLPAGIEYWQPLFFTAPLVPLFDYLPDNTLLVTRDLQESADRFRRDVQQ
RFESRGVDPMRPLLPPSQLWLTPEELNQQMKTLPRVQLNNDKLPRKAANTNLGYTALPDL
KVNPQLKSPLDPLRRFLESTEAAVIFSVESEGRRESVQELLARIKIKPAEIRSLTDATVP
GIYVMIGAAEHGFVDNDRQRVLICESDMLGERVVRRRQDTRRTINTDTLIRNLAELRPGQ
PVVHLEHGVGRYQGLTTLEAGGIKAEYLILTYAGEDKLYVPVSSLHLISRYAGGADESAP
LHKLGGEAWSKARQKAAEKVRDVAAQLLDIYAQRAVKPGFAFKHDREQYREFCQSFPFET
TPDQEQAINAVLSDMCQPVAMDRLVCGDVGFGKTEVAMRAAFLAVHNHKQVAVLVPTTLL
AQQHYDNFRDRFANWPVRIEVLSRFRSAKEQQQVLDDTREGKVDIIIGTHKLLQSDVHWH
DLGLLVVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA
RRLAVKTFVRQYDELVVREAILREVLRGGQVYYLYNDVENIEKARNRIAELVPEARVAVG
HGQMRERELERVMTDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQLRG
RVGRSHHQAYAYLLTPHPKAMTTDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLGE
DQSGQMASVGFTLYMEMLESAVDSLKSGKEPSLEDLTQSQTEVELRMPALLPEDYLPDVN
MRLSFYKRIASARSDTELTELKIELIDRFGLLPDAGRHLLAAAGLRLQAQDLGIRRIEAQ
EKGGFVEFSEKNHVDPAYLIGLLQNNPKQYRLDGPSKLKFICDLTDRTKRIEFIADLLTA
FAAHPV
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctgaaaacacgctatgaactcccggcccgtgccgcagacacccgccagctcggt
gaaatgaccggtgcagcctgtgcggtggaaaccgcgtcgataattgaacaacacgacggc
cccgtcatcctggtgacccgcgatatgcagaatgccctgcggctgcgggatgagatccgc
cagtttaccgcgctcccggcagaaacccttgccgactgggaaactctgccgtatgacagc
ttttcgccgcaccaggagattatctccaaccggttatccacattataccgtctgccgacc
ctcgaaaaaggcgcactgattctgccggtcaatacactgatgcagaaagtgtgtccgcct
gaatttctcaccagtcatgcgctggtgatggccaaaggggaaaagctgtcgcgggataag
ctgcgtgaagagctggttcagggcggctaccgtagtgtcgaacaagtactggagcacggc
gagtttgccattcgcggcgcattgctggatctgtttccgatgggcagcgaactgccgttc
cgaattgatttctttgatgatgaaatcgacagcctgcgcacctttgatgtcgacacccag
cgcaccctcgatgaagtgaatgcgatcaatcttctgcctgctcacgaattcccgacggat
aaagatgctatcgagctgttccgcagtcagtggcgggaaacctttgaggtgcgccgcgac
ccggagcatgtttatcagcaggtcagcaaaggtaccctgcccgccggtatcgagtactgg
cagccgctgtttttcaccgcaccgctggtaccgctgtttgactatctgccggataacacc
ctgctggtgacccgggatttacaggaatccgccgaccgcttccgccgtgatgtgcaacag
cgttttgagagccggggtgtggatccgatgcgcccgttactgccgccgtcacagctgtgg
ctgacaccggaagaactcaatcagcagatgaaaacgctgccgcgtgtgcagctcaataat
gacaaactgccacgcaaagccgccaataccaacctcggctataccgctctgccggatctg
aaagtcaatccgcagctgaaatccccgcttgacccgctgcgccgcttcctggaaagcaca
gaggctgccgtgattttctcggtggaaagtgagggacggcgcgaaagcgtacaggaactg
ctggcgcgcatcaaaatcaaaccggcggaaatccgcagtctgacggatgctaccgtgccg
ggtatttatgtcatgatcggtgccgctgagcacggctttgttgataacgaccgtcagcgc
gtcctgatctgcgaaagcgatatgctgggtgagcgagtggtgcgccgccgccaggacacc
cgccgcacaattaacaccgacaccctgatccgcaacctcgcggaactgcgccccggtcag
ccggtagtgcatctggagcacggggtcggccgctatcagggattaaccaccctggaggcc
ggggggatcaaggcagaatacctgatcctcacctacgccggggaagacaaactgtatgtc
ccggtgtcatcgctgcatctgatcagccgctatgccggaggggcagatgaaagcgccccg
ctgcataaactcggcggtgaagcctggagcaaagcacgtcagaaagcagcggaaaaagtc
cgcgatgtggcggcacagttactggatatttatgcacagcgggccgtcaaacccggcttt
gcctttaaacatgatcgcgaacagtaccgcgagttttgccagtctttcccgtttgaaacc
actccggatcaggagcaggctattaatgccgtgctgagcgatatgtgtcagccggtggcg
atggaccggctggtgtgcggtgatgtcggtttcggtaaaaccgaggtcgcaatgcgggcg
gccttcctcgccgtccataaccacaagcaggttgctgtgctggtgccgaccactctgctc
gcgcagcagcattatgataacttccgtgaccgtttcgccaactggccggtgcggattgaa
gttctgtcccgtttccgcagcgccaaagagcagcagcaggtgctggatgataccagagaa
ggaaaagtggatatcattatcggcacacataagctgttgcagagcgatgtgcactggcat
gatctcggcctgctggtggtggacgaagagcaccgctttggtgtccgccataaagagcgc
atcaaggcaatgcgcgccaatgtggatatcctgaccctcaccgccaccccgattccgcgt
accctgaatatggcgatgagcggcatgcgggacctttctattatcgccaccccgccggca
agacggctggcggtgaaaacctttgtccgtcagtatgatgagctggtggtgcgggaggcg
attctgcgtgaggtactgcgcggcggccaggtctattatctctacaatgatgtggagaat
attgaaaaagcccgcaaccgtattgcggaactggtaccggaagcccgtgtggcagtcggc
cacggacagatgcgtgagcgcgagctggaacgggtcatgaccgatttccaccatcagcgt
tttaatgtgctggtatgcaccacgattattgaaaccggtatcgatattcccagcgccaat
accattatcatcgaacgggccgatcatttcgggctggcacagctgcatcagctgcgcggc
cgtgtcgggcgttcacaccatcaggcctatgcttatctgctgacgccacacccgaaagcc
atgaccaccgatgcccataaacgcctggaagcaattgcttctctggaagatttaggagcc
ggatttgctctcgccactcatgacctggaaatccgtggtgcgggtgagctgctgggcgag
gatcagagcggccagatggccagcgttggtttcacactctatatggaaatgctggaaagt
gcggttgattccctgaaaagcggcaaagagccgtcactggaagatctcacgcagagccag
accgaagtggagctgcgtatgccggccctgctgccggaagattacctgccggatgtaaac
atgcgcctctccttctacaaacggattgccagcgcgcgcagcgataccgaactgaccgag
ctgaaaattgagctgattgaccgcttcggtctgctgccggatgccggtcgtcacctgctg
gcggcagcgggtctgcgcctgcaggcacaggacctggggatccgccggattgaggcgcag
gagaaaggcggttttgttgagttcagtgagaaaaaccatgtcgacccggcgtatcttatc
gggcttttgcaaaataacccgaaacagtaccggctggacggcccgtcaaaactgaaattt
atctgtgacctgaccgaccgcaccaaacgcattgagtttatcgcggatttactgactgca
tttgccgctcatccggtataa
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