Marmota marmota marmota (Alpine marmot): 107136177
Help
Entry
107136177 CDS
T09644
Symbol
Col18a1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XVIII) chain
KO
K06823
collagen type XVIII alpha
Organism
mmma
Marmota marmota marmota (Alpine marmot)
Pathway
mmma04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
mmma00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
107136177 (Col18a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mmma04147
]
107136177 (Col18a1)
00535 Proteoglycans [BR:
mmma00535
]
107136177 (Col18a1)
00536 Glycosaminoglycan binding proteins [BR:
mmma00536
]
107136177 (Col18a1)
Exosome [BR:
mmma04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
107136177 (Col18a1)
Proteoglycans [BR:
mmma00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
107136177 (Col18a1)
Glycosaminoglycan binding proteins [BR:
mmma00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107136177 (Col18a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
DUF959
Collagen
Collagen_trimer
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
107136177
NCBI-ProteinID:
XP_048659911
LinkDB
All DBs
Position
Unknown
AA seq
1454 aa
AA seq
DB search
MAPDPSRRLGRLLLLLLTCCLVPSWANLLTLDWVVHRHRRLQRHTGLPAPGQPARAACSG
PRHTATHVAPQDDPAEQRTAPASPRPPLENPKAAPSRAPGAPISATAPAAPAASPDTREE
NVAGVGAKILSIAQGIQSIVQLWNEATPTQSSAGSASAPTDPLALAGPSGPPEESGTTLG
PHRGALSSLGTWTAESGTLAVPTQSPPSLDRLQAPLRGHSVPRESPDSVREEVGLPQLLG
EPSPQQITQIEDPDVGLAYVFGPDTNSGQVARYRVPSPFFPDFSLLFHIRPASEGPGVLF
ALTDAAQAVVLLGVKLSGVHDGHQDISLLYTEPGDSQTRTAASFRQPAFVGQWTRFALSV
DGSSVALYVDCEEFQRLPFARSPRGLELEPGAGLFVGQAGGADPDKFQGSKCGGALGGQA
QSLCLSAVQTLPGSDLDGTSDESARRPGSSLERGGLKGQKGEPGAQGLPGPIGPPGPAGP
VVQGSNAQSVPGAQGPPGPPGPPGKDGAPGRDGEPGDPGEDGKPGDTGPQGFPGTPGDMG
PKGEKGDPGIGPRGPPGPQGPPGPPGPSLRHDKLTFIDMEGSGFGGDLESLRGPRGFPGP
PGPPGVPGLPGEPGRFGMNSSHAPGPAGLPGVPGRDGSPGFPGPPGPPGAPGKEGPPGQT
GQKGSLGDTGAPGPKGSKGDPGPVGAPGESGFVGAPGPAGPPGPPGPPGPPGPGLAAGFD
DMEGSGAPFWSTARGSEGPQGPPGPPGLKGDPGARGPPGAKGEVGADGARGSPGLPGREG
PAGPPGPKGDKGSPGERGDPGKDGVGQPGLPGPPGPPGPVVYVSDQDGAVASAPGPEGRP
GFAGFPGPAGPKGDPGSRGEQGFPGPKGEKGEPGGVLGPDGRTLGPAQKGAKGEPGFRGP
PGPYGRPGYKGEIGLPGRPGRPGVNGLKGEKGEPGDASLGLGMRGMPGPPGPPGPPGPPG
VPLYDSNAFVESGHPGPRGLQGLPGPSGPKGDKGEVGPPGPPGQFPVDFLSLAADMKGEK
GDLGDTGQKGEKGEPGASGGFFSSSVPGPPGPPGPPGYPGIPGPKGESIQGQPGPPGPQG
PPGIGYEGRQGPPGPPGPPGPPGPPSFPGPHRQTVSVPGPPGPPGPPGPPGTIGTSSGAW
VPQVRIWATYQTMLDRARELPEGWLVFVAEREELYVRVRNGFRKVLLEARIPLPSSTDNE
VAVRQPPVVQLHEGNSYPRREHSYSTVRPWRADDTLASPQRLPDPQPYPGAPHHHGSYVH
LRPARPTASPAHTHQDFQPVLHLVALNSPLSGGMRGIRGADFQCFQQARAVGLAGTFRAF
LSSRLQDLYSIVRRADRGTVPIVNLKDEVLAPSWEALFSGSGGQLKPGARIFSFDGRDVL
RHPAWPQKSVWHGSDPSGRRLTESYCEAWRTEAAGAMGQASPLLAGRLLEQEATSCRNAY
VVLCIENSFMTSSS
NT seq
4365 nt
NT seq
+upstream
nt +downstream
nt
atggccccggaccccagcagacgccttggccggctgctgctgctgctgctcacctgctgc
cttgtgccctcctgggccaacctgctgaccctggactgggtggtccaccgacatcgccga
ctccaaagacacactggtctcccagccccagggcagcctgcccgtgcagcctgcagcggc
ccccgccacacngccacacacgtggccccccaggatgaccccgcggagcaaaggacggcc
cctgccagccccaggccacccttggagaatccgaaggccgccccaagcagggctcctggc
gctcccatcagtgccaccgcccccgccgccccagctgcaagcccggacacgagggaggag
aacgtcgcgggagtgggagccaagatcctgagcatagcccagggcatccagagcatcgtc
cagctgtggaacgaggccacccctacccagagctctgctggatccgcctcggcccccacg
gaccctctggccctcgcggggccctctggcccgcccgaggagagcgggaccactctcggg
cctcacagaggagctctgagctctctgggcacctggacggccgagtctggcactctggct
gtgcccacccagtcgcctccctccctggacaggctccaggcaccactgagggggcactcg
gtgccacgggagtccccagacagtgtccgtgaggaggtggggctgccacaactccttgga
gagccctcgccccagcagatcacccagatcgaggaccccgacgtcgggctagcctacgtc
tttggaccagacaccaacagcggccaggtggcccggtaccgcgtgcccagccccttcttc
cctgacttctcgctgctgttccacatccggccggcctcggagggccccggggtgctgttc
gccctcacggacgcggcgcaggccgtggtcctgctgggcgtgaagctctcgggggtgcat
gatgggcaccaggacatctcactgctctacaccgagccgggcgacagccagacccgcaca
gcggccagcttccgccagcctgcctttgtgggccagtggacacgctttgcgctcagcgtg
gacggcagctctgtggctctgtacgtggactgcgaggagttccaacggctgccgtttgct
cggtctccacggggcctggagctggagcctggcgctggcctctttgtggggcaggctggg
ggagccgaccccgacaagttccagggaagtaagtgtggtggagctctcggtgggcaggca
cagtctctctgcctctctgcagttcagaccctccctggctcagatttggatggcactagc
gatgagagtgcccggcgccctggaagcagcctggaaaggggaggcctgaagggacaaaag
ggtgagccgggagctcagggcctgcctggccccatcggtcctccaggccctgcaggccca
gtggtgcagggttccaatgcacagtctgtccctggggcacagggacccccgggacctcca
gggccaccagggaaggatggtgccccaggaagggatggtgagccgggagacccgggggaa
gacggaaagcccggtgacactgggccacagggcttcccggggactccaggagatatgggc
cccaagggcgagaagggagatcctgggatcgggccaagaggacccccaggaccccaaggg
cctccagggccaccaggaccctccctcagacatgacaagctgaccttcatcgacatggaa
ggctctggctttggtggtgatctggagagcctcaggggcccacgtggcttccccggcccc
ccgggccccccgggtgtcccaggcctgcctggcgagcctggccgctttggcatgaacagc
tcccatgctccgggacctgctggccttcctggggttcctgggcgcgacggatcccctggg
tttccaggccccccgggcccccccggagctccaggaaaagagggtccaccaggacagacg
ggccagaaaggcagtctgggtgacacaggcgccccaggacccaagggcagcaagggagac
cctggccctgttggtgctcccggggagagcggcttcgtaggagcccctggtcccgctgga
cctccaggaccgccgggcccccctgggccaccaggaccaggacttgctgctggatttgac
gacatggagggctccggagcacctttctggtcgacagcccgcggctctgaggggccacag
ggaccacccggcccgccaggactcaagggggatcctggagcccgcgggccacctggggcc
aagggggaagttggagccgacggagcccgcgggtcccctggcctccctggcagagaaggc
ccggcagggcccccgggacctaaaggagacaaagggagccccggagaaagaggtgaccca
ggaaaggatggagtgggacaaccaggcctgcctgggcccccaggacccccggggcctgtg
gtctacgtgtctgatcaggacggagcagtggccagtgcaccggggcctgagggcaggccg
ggcttcgcaggctttcctggacctgctggaccaaagggcgacccgggctccagaggcgag
cagggcttcccaggacccaagggggagaagggagagcctggcggtgtcttgggccctgac
ggcagaaccctgggccctgcccagaaaggagccaagggagagccgggcttccgaggaccc
ccgggtccgtatgggcggcctgggtacaagggtgagatcggccttcctggacgaccgggt
cgccctggggtgaatgggctgaagggagagaagggggaacctggagacgccagcctcgga
cttggaatgaggggcatgcccggccccccagggcctcctgggcccccaggccctccgggg
gtgcccctctacgacagcaacgcatttgtggagtctggccaccctgggcctcggggactg
caagggctgccaggaccttctggaccaaagggtgacaaaggagaagtggggccacctgga
cctccaggccagttccccgtggacttcctcagcctggcagctgacatgaagggagagaag
ggggacctgggggacactggacagaaaggagagaagggggagccaggggccagcggcgga
ttcttcagctccagtgtgcctggacccccaggtccccccggcccaccaggctaccctggg
attccgggtccaaagggagagagcatccagggccagccgggcccacccggacctcaggga
cctcctggcattggctatgaggggcgccagggccctcctgggcccccaggcccccctggc
cccccggggcccccgtcattccctggtcctcacaggcagactgtcagtgtccctggcccc
ccaggcccacctggccccccggggccccctggaaccataggcacctcttcaggggcttgg
gtcccgcaggtgaggatctgggccacctaccagaccatgctggacagggcacgagagctg
cccgagggctggctcgtctttgtggctgagagggaggaactctatgtacgggtccgaaac
gggttccggaaagttctgctggaggcccggatccctctgccatccagcacggacaatgaa
gtggctgtccgccagcccccagtggtgcagctgcacgagggcaattcatatccccggagg
gagcactcctactccaccgtgcgcccctggagagcagacgacaccctggccagcccccag
cgcctccccgatccccagccctaccctggagctccgcaccaccacggctcctatgtgcat
ctccggccagcccgccccacagcctcacctgcccacacccatcaggacttccagccggtg
ctccacctggtcgcgctcaacagcccactctcgggcggcatgcgcggcatccgaggggcc
gacttccagtgcttccagcaggcccgagctgtggggctggctggcaccttccgtgccttc
ttgtcctcgcggctgcaggacctctacagcatcgtgcgccgtgctgaccgtgggaccgtt
cccatcgtcaacctcaaggatgaagtactggctcccagctgggaggccctgttttccggc
tccgggggccagctgaagcccggggcccgcatcttctctttcgacggcagggacgtcctg
aggcaccctgcctggccccagaagagtgtatggcatggctcagaccccagtgggcgcagg
ctgacggagagctactgtgaggcgtggcggacagaggctgccggagccatgggccaggca
tccccgctgctggcgggcagactgctggaacaggaagccacaagctgccgcaacgcctat
gtggtcctctgcatcgagaacagtttcatgacctcctcctcctaa
DBGET
integrated database retrieval system
