Marmota marmota marmota (Alpine marmot): 107136862
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Entry
107136862 CDS
T09644
Symbol
Prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
mmma
Marmota marmota marmota (Alpine marmot)
Pathway
mmma03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mmma00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107136862 (Prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mmma03041
]
107136862 (Prpf40a)
Spliceosome [BR:
mmma03041
]
Complex A
U1 snRNP components
U1 related factors
107136862 (Prpf40a)
Complex B
107136862 (Prpf40a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
107136862
NCBI-ProteinID:
XP_015334670
Ensembl:
ENSMMMG00000022291
LinkDB
All DBs
Position
Unknown
AA seq
1039 aa
AA seq
DB search
MQATPSEAEAGGESPQSCVSAARSDWTVGKPVSLLAPLIPPRSSGQPLTFGPSGRQPLRS
LLVGMCSGSGRRRSSLSPTMRPGTGAERGGLMVSEMESHPPSRGPGDGERRLSGSSLCSS
SWVSADGFLRRRPSMGHPGMHYAPMGMHPMGQRANMPPVPHGMMPQMMPPMGGPPMGQMP
GMMSSVMPGMMMSHMSQASMQPALPPGVNSMDVAAGTASGAKSMWTEHKSPDGRTYYYNT
ETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELEDLEGY
QNTIVAGGLITKSNLHAMIKAEESSKQEECTTTSTAPVPTTEIPTTMSTMAAAEAAAAVV
AAAAAAAAAAAAANANSSTSTTNTVGTVPVVPEPEVTSIVATVVDNENTVTISTEEQAQL
TNTSAIQDLSIEVSSNTGEETSKQETVTDFTPKKEEEESQPAKKTYTWNTKEEAKQAFKE
LLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKE
AKESFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKEQ
AKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFE
EHIRALEKEEEEEKQKSLLRERRRQRKNRESFQIFLDELHEHGQLHSMSSWMELYPTISS
DIRFTNMLGQPVFSLGSTALDLFKFYVEDLKARYHDEKKIIKDILKDKGFVVEVNTTFED
FVAIISSTKRSTTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQAT
PPIELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFMHVLEHECQHHHSKNKKHSKKS
KKHHRKRSRSRSGSDSDDDDSHSKKKRQRSESRSASEHSSSAESERSYKKSKKHKKKSKK
RRHKSDSPESDAEREKDKKEKDRESEKDRTRQRSESKHKSPKKKTGKDSGNWDTSGSELS
EGELEKRRRTLLEQLDDDQ
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcgacgccgagtgaggctgaggctgggggcgaatcaccgcagagctgcgtgtcg
gcagcgcgctctgattggacagtggggaagcctgtcagcttattggccccactgatcccg
ccccgcagctcagggcagcctttaacctttggccccagcgggcgccagccactcagatcg
cttcttgttggtatgtgtagcggcagtggccgccggcggagcagtctgagtccgacgatg
aggccggggacgggagctgagcgtggaggcctcatggtgagtgaaatggagagccatcct
ccctcgcggggtcccggggacggggagcggagattgtccggctcaagcctgtgctccagc
tcttgggtctctgctgacggcttcctgaggagacggccttcgatggggcaccctggcatg
cattatgcaccaatgggaatgcatcctatgggtcagagagccaatatgcctcctgtacct
catggaatgatgccacaaatgatgccccctatgggagggccaccaatgggacaaatgcct
ggaatgatgtcttcagtaatgccaggaatgatgatgtctcatatgtctcaggcttccatg
caacctgccttaccgccaggagtaaatagtatggatgtagctgcaggcacagcatctggt
gcaaaatcaatgtggactgaacataaatcccctgatggaaggacttactactacaatact
gaaacaaaacagtctacatgggaaaaaccagatgatcttaaaacaccagctgagcaattg
ttatctaaatgcccctggaaggaatacaaatctgattctggaaaaccttactattataat
tctcaaacaaaagaatcccgctgggctaaacctaaagaacttgaggatcttgaaggatac
cagaataccattgttgctggaggtcttattacaaaatcaaacctgcatgccatgatcaaa
gctgaagaaagcagcaagcaagaagagtgcaccacaacatcaacagccccagttcctaca
acagaaattcccaccacaatgagcaccatggctgctgccgaagcagcagctgctgttgtt
gcagcggcggctgcagctgcggcagctgctgctgcagccaatgccaattcttccacttct
actactaatactgtgggaactgttccagttgttcctgaacctgaagttacttccattgtt
gctactgttgtagataatgaaaatacagtaactatatccactgaagaacaagcacaactt
actaatacctctgctattcaagatctgagtattgaagtatccagtaatactggagaagaa
acatctaagcaagaaactgtaactgattttactcccaaaaaagaggaggaagagagtcaa
ccagcaaaaaaaacatatacttggaatacaaaagaagaagcaaagcaagcatttaaagaa
ttattgaaagaaaagcgggtaccatccaatgcttcatgggagcaagctatgaaaatgatc
attaatgatcctcgatatagtgctttagcaaagttgagtgagaaaaagcaggcctttaat
gcctataaagtccagacagagaaagaggaaaaagaagaagcaagatcaaaatacaaagag
gctaaggaatccttccagcgttttcttgaaaatcatgagaaaatgacttccacaaccaga
tacaaaaaggcagaacaaatgtttggagagatggaagtctggaatgcaatatcagaacgt
gatcgtcttgaaatctatgaagatgttttgttctttctgtcgaaaaaagaaaaggaacaa
gcaaagcagttgcgaaaaagaaattgggaagcattaaaaaacatacttgacaacatggct
aatgtaacatactctacaacttggtctgaagcacagcagtatctaatggataatccaact
ttcgcagaagatgaggagttacagaacatggacaaagaagatgcattaatttgctttgaa
gagcatattcgagctctagaaaaggaagaagaagaagaaaaacagaagagtttgctaaga
gaaagaagacgacaacgtaaaaatagggaatcttttcagatatttttagatgaattgcat
gaacatggacagcttcattctatgtcatcttggatggaattgtatccaactattagttct
gatattcgattcactaatatgcttggtcagcctgttttttcattaggatcaactgcactt
gatcttttcaagttttatgttgaggatcttaaagcacgttatcatgatgaaaaaaagata
ataaaagacattctaaaggacaaaggatttgtagttgaagtaaatactacttttgaagac
tttgtggcaataatcagttcaactaaaaggtcgactacattagatgctggaaatatcaag
ttggctttcaatagtttactagaaaaggcagaagcccgtgaacgtgaaagagaaaaagag
gaggctcggaagatgaaacgaaaagaatctgcattcaagagcatgctgaaacaggctact
cctccaatagagttggatgctgtctgggaagatatccgggagagatttgtaaaagagcca
gcatttgaagacattactctagagtctgaaaggaaaagaatatttaaagattttatgcat
gtgcttgagcatgaatgtcaacatcatcattcaaagaacaagaaacattctaagaaatct
aaaaaacatcataggaaacgttcccgctcccgatcggggtcagattcagatgatgatgac
agtcattcgaagaaaaaacgacagcgttcagagtcccgttctgcttcagaacattcttct
agtgctgagtctgagagaagttataagaaatcaaaaaagcataagaagaaaagcaagaag
aggagacataaatctgactctccagaatcagatgctgagcgagagaaggataaaaaagaa
aaagatcgggaaagtgaaaaagatagaactagacaaagatcagaatcaaaacacaaatca
cctaagaaaaagactggaaaagattctggtaattgggatacttctggcagtgaactgagt
gaaggtgaattagaaaagcgcagaagaacccttttggagcaactggatgatgatcaataa
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