Marmota marmota marmota (Alpine marmot): 107137298
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Entry
107137298 CDS
T09644
Symbol
Msh6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
mmma
Marmota marmota marmota (Alpine marmot)
Pathway
mmma01524
Platinum drug resistance
mmma03430
Mismatch repair
mmma05200
Pathways in cancer
mmma05210
Colorectal cancer
Brite
KEGG Orthology (KO) [BR:
mmma00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
107137298 (Msh6)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
107137298 (Msh6)
09162 Cancer: specific types
05210 Colorectal cancer
107137298 (Msh6)
09176 Drug resistance: antineoplastic
01524 Platinum drug resistance
107137298 (Msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mmma03400
]
107137298 (Msh6)
DNA repair and recombination proteins [BR:
mmma03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
107137298 (Msh6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
PWWP
MutS_II
Motif
Other DBs
NCBI-GeneID:
107137298
NCBI-ProteinID:
XP_015335171
Ensembl:
ENSMMMG00000009374
LinkDB
All DBs
Position
Unknown
AA seq
1261 aa
AA seq
DB search
MEGYPWWPCLVYNHPFDGTFIREKGKSVRVHVQFFDDSPTRGWVSKRLLKPYTGSKSKEA
QKGGHFYSSKPEILRAMQRADEALNKDKAERLELAVCDEPSEPEEEEEMEVGATYASDKS
EEDNEIESEEEVKPKMEGSRRSSRQVKKRRVISDSESDIGGSDVEFKPDAKEEGSSDEIS
SGVGDSESEGLDSPVKVAPKRKRMVTGSSAFKRKSSRKEMPSTTKRAAGILSETKNTLSA
FSAPQNSDSQAHVSGGSDNSSRPTTWYHETLEWLKKEKRRDEHRRRPDHPDFDASTLYVP
EDFLNSCTPGMRKWWQIKSQNFDLVIFYKVGKFYELYHMDALIGVNELGLVFMKGNWAHS
GFPEIAFGRYSDSLVQKGYKVARVEQTETPEMMEARCRKMAHISKHDRVVKREICRIITK
GTQTYSVLEGDPSENYSKYLLSLKEKEEDSSGHTRMYGVCFVDTSLGKFFIGQFSDDRHC
SRFRTLVAHYPPVQVLFEKGNLSVETKTILKSSLSSSLQEGLIPGSQFWDAAKTLRTLLE
EGYFTEKLNEDSGGMLPQVLKDMTSESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQE
LLSMANFEEYIPLDSDMVNTRSGAKFTKANQRMVLDAVTLNNLEIFVNGTNGSTEGTLLE
RIDTCHTIFGKRLLKQWLCAPLCSPFAINDRLNAIEDLIVVPDKISEVTDLLKKLPDLER
LLSKIHNVGSPLKSQNHPDSRAIMYEETTYSKKKIIDFLSALEGFKVMCKIIGIMEEAVD
DFKSKILKQVVSLQTKNPEGCFPDLTSELNRWDTAFDHEKARKTGLITPKAGFDSDYDQA
LADIRENEQSLLEYLEKQRNRIGCRTIVYWGIGRNRYQLEIPENFTTHNLPEEYELKSTK
KGCKRYWTKTIEKKLANLINAEERRDISLKDCMRRLFYNFDKNYKDWQSAVECIAVLDVL
ICLANYSQGGDGPMCRPVILLPGEDTLPFLELKGSRHPCITKTFFGDDFIPNDILIGCEE
EEKENGKAYCVLVTGPNMGGKSTLIRQAGLLAVMAQMGCYVPAEVCRLTPVDRVFTRLGA
SDRIMSGESTFFVELSETASILTHATAHSLVLMDELGRGTATFDGTAIANAVVKELAETI
KCRTLFSTHYHSLVEEYSKNVAVRLGHMACMVENECEDPSQETITFLYKFIKGACPKSYG
FNAARLANLPEEVIQKGHRKAREFEKMNQSLRLFREVCLASERSTLDAETVHKLLSLIKE
L
NT seq
3786 nt
NT seq
+upstream
nt +downstream
nt
atggagggttatccctggtggccttgcctggtttacaaccacccctttgatggaacattc
atccgcgagaaagggaaatcagtccgtgttcatgtacagttttttgatgacagcccaaca
aggggctgggttagcaaaaggctattaaagccatatacaggttcaaaatcaaaggaggcc
cagaagggaggccatttttacagttcaaagcctgaaatactcagagcaatgcaacgtgca
gatgaagccttaaataaagacaaggctgagaggcttgaattggcagtttgtgatgagccc
tcagagccagaagaggaggaagagatggaggtaggtgcaacttatgcatcagataagagt
gaagaagataatgaaattgagagtgaagaggaagtgaagcctaagatggaaggatctagg
cgaagtagccgtcaagtaaaaaaaaggagagtcatatcagactctgagagtgacattggt
ggctctgatgtggaattcaaaccagatgctaaggaggaaggaagcagtgatgaaataagc
agtggagtgggggatagtgagagtgaaggcctggacagccctgtcaaagttgctccaaaa
cgtaagagaatggtgacaggaagtagtgcttttaaaaggaaaagttcaaggaaagaaatg
ccctcaaccaccaaacgagcagctggcattttatcagaaaccaaaaatactttgagtgct
ttctctgctcctcaaaattctgattctcaagcccatgttagtggagggagtgataatagt
agtcgccccactacctggtatcatgaaactttagaatggcttaagaaggaaaagagaaga
gatgagcataggaggcggcctgatcaccccgattttgatgcatccacactctatgtgcct
gaagatttccttaattcctgtactcctggtatgaggaagtggtggcagattaagtctcag
aactttgatcttgttatcttttataaggtggggaagttttacgaactgtatcacatggat
gctcttattggagtcaatgaattgggactggtattcatgaaaggcaactgggcccattct
ggttttcctgaaattgcatttggccggtactcagattccctggtacagaagggctataaa
gtagcacgagtggaacagactgaaactcctgagatgatggaggcacgatgccgaaagatg
gcacatatatctaagcatgatagagtggtgaagagagaaatttgtaggatcattactaag
ggtacacagacctatagtgtgctggaaggtgatccctctgagaactatagtaaatatctt
cttagcctcaaagaaaaagaggaagattcttctggccacacacgcatgtatggtgtgtgc
tttgttgatacttccctgggaaagtttttcataggtcagttttcagatgatcgtcattgt
tccagatttaggactctagtggcacactatcctccagtacaagtcttgtttgaaaaagga
aatctctcagtggagacgaagacaattctaaagagttcattatcctcctctcttcaggaa
ggtctgataccggggtctcaattttgggatgcagctaaaactttgagaactctcctcgaa
gagggctattttactgaaaaactaaatgaggacagtggggggatgttgccccaggtgctt
aaagatatgacctcagagtctgattccattgggctgacaccaggagaaaaaagtgaattg
gccctctctgctctaggtggttgtgtcttctacctcaaaaaatgccttattgatcaggag
cttttatccatggctaatttcgaagaatatattcccttggattctgacatggtcaataca
agatctggtgctaaatttactaaagctaatcaacgaatggtgctagatgcagtgacatta
aacaacttggagatttttgtaaatgggacaaatggttctactgaagggaccctgctagaa
agaattgatacttgccatactatttttggtaaacgacttctaaaacagtggctttgtgct
ccgctgtgtagcccttttgctatcaatgaccgtctaaatgccatagaagacctcatcgtc
gtgcctgacaaaatctctgaagtcacagaccttctaaagaagctgccagatcttgagagg
ctactgagtaaaattcataatgttgggtctcccctaaagagccagaaccaccctgatagc
agggctataatgtatgaagaaactacatatagcaaaaaaaagatcattgattttctttct
gcacttgaaggattcaaagtaatgtgtaaaattataggaattatggaagaagctgttgat
gattttaagtccaaaatccttaagcaggttgttagtctacagacaaaaaatcctgaaggc
tgcttccctgatttgacttcagaactgaatcgatgggatacagcctttgaccatgaaaaa
gctcgaaagactggactgattactcccaaagcaggatttgactctgattatgaccaagcg
cttgctgacataagagaaaatgagcagagcctcttagaatacttagagaaacagcgcaat
cgaataggctgtaggaccatagtatattgggggattggtaggaatcgttaccagttggaa
attccagagaattttaccacccataatttgccagaagaatatgagctgaaatctaccaag
aagggctgtaaacgatactggaccaaaactattgagaagaagttggctaacctgataaat
gctgaagaacgcagagatatatcattgaaggactgcatgcggcgactgttctataatttt
gataaaaattacaaggactggcagtctgctgtagagtgcattgcagtgttggatgtctta
atatgtctggctaactatagtcaaggtggtgatggtcctatgtgtcgcccagtgattctg
ttaccaggagaagacactctccctttcttagagcttaaaggttcacgacatccctgcatt
acgaagactttttttggagatgattttattcctaatgacattctaataggctgtgaggaa
gaagagaaagaaaatggcaaagcttattgtgtgcttgttactggaccgaatatggggggc
aagtctacactcataagacaggctggcctgttagctgtaatggcccagatgggttgttat
gtacctgctgaagtgtgtaggctcacaccagttgacagagtgtttactagacttggtgcc
tcagatagaataatgtcaggtgaaagtacattttttgttgaattaagtgaaactgccagc
atacttacacatgcaacagcacattcccttgtgcttatggatgaattaggaagaggtact
gcaacatttgatgggacagcaatagcaaatgcagttgttaaagaacttgctgagaccata
aagtgtcgtacattgttttctacccactatcattcattggtagaagaatattctaaaaat
gttgctgtgcgcctaggacatatggcatgcatggtagaaaatgagtgtgaagacccaagc
caggagactattaccttcctctataaattcattaagggagcttgtcctaagagctatggc
tttaatgcagcaaggcttgctaatcttccagaggaagtcattcaaaagggacatagaaaa
gcaagagaatttgagaagatgaatcagtcactacgactatttcgggaagtttgcctggct
agtgaaaggtcgactctagatgctgaaactgtccataagttgctgagtttgattaaagag
ttatag
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integrated database retrieval system
