Marmota marmota marmota (Alpine marmot): 107138568
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Entry
107138568 CDS
T09644
Symbol
Sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
mmma
Marmota marmota marmota (Alpine marmot)
Pathway
mmma03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mmma00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107138568 (Sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mmma03041
]
107138568 (Sf3b1)
03036 Chromosome and associated proteins [BR:
mmma03036
]
107138568 (Sf3b1)
Spliceosome [BR:
mmma03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
107138568 (Sf3b1)
Complex B
107138568 (Sf3b1)
Complex C
U2 SnRNP specific factors
107138568 (Sf3b1)
Chromosome and associated proteins [BR:
mmma03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
107138568 (Sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
TALPID3
Motif
Other DBs
NCBI-GeneID:
107138568
NCBI-ProteinID:
XP_015336671
Ensembl:
ENSMMMG00000011081
UniProt:
A0A8C5ZAJ2
LinkDB
All DBs
Position
Unknown
AA seq
1304 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK
KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE
LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAK
GSETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTE
RDTPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPI
GTPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAG
YVPIRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLV
DVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLM
SPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNL
AKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQA
RHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYG
IESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSP
DEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVEL
ANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAF
QEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAV
VMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRL
TPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNT
FGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPE
LNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVY
GFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARK
VRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagactcacgaagatattgaagcacagattcgagaaattcaaggc
aagaaggcagctcttgatgaagctcaaggagtgggccttgattccactggttattatgac
caggaaatttatggtggaagtgatagcagatttgctggatatgtgacatcaattgctgca
actgaacttgaagatgatgacgatgactactcatcatctacaagtttgcttggtcagaag
aagccaggatatcatgcccctgtggcattgcttaatgatataccacagtcaacagaacag
tatgacccatttgctgagcaccggcctccaaagattgcagaccgggaagatgaatacaaa
aagcacaggaggaccatgataatttccccagagcgtcttgatccttttgcagatggaggg
aagacccctgatcctaaaatgaatgctaggacttatatggatgtaatgcgagaacagcat
ttgactaaagaagagagagaaattaggcaacagttagcagaaaaagctaaagctggagaa
ctaaaagtcgtcaatggagcagcagcatcccagcctccctcaaaacgaaaacgccgttgg
gatcaaacagctgatcagactcctggtgccactcccaaaaagctgtcaagttgggatcag
gcagagacccctgggcataccccttccttaagatgggatgagacgccaggtcgtgcaaaa
ggaagtgagactcctggagcaaccccgggctcaaaaatatgggatcctacacctagtcac
acacctgcgggagctgctactcctggacgaggcgatacaccagggcatgcaacaccaggc
catggaggcgcaacttccagtgctcggaaaaacagatgggatgagacccccaaaacagaa
agagatactcctgggcatggaagtggatgggctgagactcctcgaacagatcgaggtgga
gattcaattggtgaaacaccgactccaggagccagtaaaagaaagtcacgttgggatgaa
acaccagctagtcagatgggtggtagcactcctgttctgactcctggaaaaacaccaatt
ggcacaccggcaatgaacatggctacccccacaccaggtcacataatgagtatgactcct
gaacaacttcaggcttggcggtgggagagagaaatcgatgaacgaaatcgcccactctct
gatgaagagctagatgctatgtttccagaaggatataaggtacttccccctccagctggt
tatgttcctattcgaactccagctcgaaaactgactgcaactccaacacctttgggtggt
atgactggattccacatgcaaactgaagatagaactatgaagagtgttaatgaccaacca
tctggaaatcttccatttttaaaaccagatgatattcagtactttgataagctattggtt
gatgttgatgaatcaacacttagtccagaagaacaaaaagagagaaaaataatgaaattg
cttttaaaaattaagaatggaacacctccaatgagaaaggctgcattgcgtcagattaca
gataaagctcgtgaatttggagctggacctttatttaatcagattcttcccctgctgatg
tctcctacacttgaggatcaagagcgtcatttacttgtgaaagttattgatagaatatta
tacaaacttgatgacttagtacgaccgtatgtgcacaagattcttgtggtcattgaacca
ttgttgattgatgaagattactatgctagagtggaaggccgagagattatttctaatttg
gcaaaggctgctggtctagctactatgatctctaccatgagacctgatatagataacatg
gatgagtatgtccgtaacacaacagccagagcttttgctgtggtagcctctgccttgggc
attccttctttattacccttcttaaaagctgtgtgcaaaagtaaaaagtcttggcaagca
agacacaccggtattaagattgtacagcaaatagctattctaatgggctgtgctatctta
ccacatctcagaagtttagttgaaattattgagcatggtcttgttgatgagcagcagaaa
gttcggaccataagtgctttggccattgctgccttggctgaagcagcaactccttatggt
atcgaatcttttgattctgtgctaaagcctctatggaagggtatccggcaacacagagga
aagggtttggctgctttcttaaaggctattgggtatcttattcctcttatggatgcagaa
tatgccaactactatactagagaagtgatgttaatccttattcgggaattccagtctcct
gatgaagaaatgaagaaaattgtgctgaaggtggtaaaacaatgttgtgggacagatggt
gtagaagcaaactatattaaaacagagatccttcctcctttctttaaacacttttggcag
catagaatggctttggatagaagaaattaccgacagttagttgatactactgtggagttg
gcaaataaagtaggtgcagcagaaattatatccaggattgtggatgatctgaaagatgaa
gctgagcagtaccgaaaaatggtgatggaaacaattgagaaaattatgggcaacttggga
gcagcagatattgatcacaaacttgaagaacaactgattgatggtattctttatgctttc
caagaacagactacagaggactcagtaatgttgaatggctttggcacagtggtcaatgct
cttggcaaacgagtcaaaccatacttgcctcagatctgtggtacagtcttgtggcgttta
aataacaaatcagcaaaagttaggcaacaggcagctgacttgatttctcgaactgctgtg
gtcatgaagacttgtcaagaggaaaaattgatggggcacttgggtgttgtattgtatgaa
tatttgggtgaagagtaccctgaagtattgggcagcattcttggagctctgaaggcaatt
gtaaatgtaataggtatgcataagatgaccccaccaattaaagatctgctacctagactc
acccccatcctaaagaacaggcatgaaaaagtacaagagaactgtattgatcttgttgga
cgtattgctgacaggggagctgaatatgtctctgcaagagagtggatgaggatttgcttt
gagcttttagagctcttaaaagctcacaaaaaggctattcgtagagctacagtcaacaca
tttggttatattgcaaaagccattggccctcatgatgtattggctacgcttttaaacaac
ctcaaggttcaggaaaggcagaacagagtttgtaccactgtagcaatagctattgttgcc
gaaacatgttcacccttcacagtacttcctgccttaatgaatgaatacagagttcctgaa
ctgaatgttcaaaatggagtgttaaaatcactctcctttttgtttgaatatatcggtgaa
atgggaaaagactacatttatgctgtaacaccattacttgaagatgctttaatggatagg
gaccttgtacacagacagacagctagtgcagtggtacagcacatgtcacttggggtttat
ggatttggttgtgaagattccctgaatcacttgttgaactatgtatggcccaatgttttc
gagacatctccccacgtaatccaggcagttatgggtgccctggaaggcctaagagttgct
attggaccatgcagaatgttacagtattgtttacagggtctgtttcacccggctcggaaa
gtcagagatgtgtattggaaaatttacaactccatctacattggttcacaggatgctctc
atagcacattacccaagaatctacaatgatgataagaacacctatattcgttatgaactt
gactatatcttgtaa
DBGET
integrated database retrieval system
