Marmota marmota marmota (Alpine marmot): 107138808
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Entry
107138808 CDS
T09644
Symbol
Atg16l1
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
mmma
Marmota marmota marmota (Alpine marmot)
Pathway
mmma04136
Autophagy - other
mmma04140
Autophagy - animal
mmma04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
mmma00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
107138808 (Atg16l1)
04136 Autophagy - other
107138808 (Atg16l1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
107138808 (Atg16l1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mmma04131
]
107138808 (Atg16l1)
03029 Mitochondrial biogenesis [BR:
mmma03029
]
107138808 (Atg16l1)
Membrane trafficking [BR:
mmma04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
107138808 (Atg16l1)
Others
Rab GTPases of specific organelles
Auto phagosome
107138808 (Atg16l1)
Mitochondrial biogenesis [BR:
mmma03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
107138808 (Atg16l1)
BRITE hierarchy
Motif
Pfam:
ATG16
WD40
ANAPC4_WD40
eIF2A
NBCH_WD40
KASH_CCD
Motif
Other DBs
NCBI-GeneID:
107138808
NCBI-ProteinID:
XP_015337067
Ensembl:
ENSMMMG00000002802
UniProt:
A0A8C5YSB9
LinkDB
All DBs
Position
Unknown
AA seq
624 aa
AA seq
DB search
MSSGLRAADFPRWKRHIAEELRRRDRLQRQSFEEIILQYNKLLEKSDLHSVLAQKLQAEK
HDIPNRHEISPGHDGTWNDSQLQEMAQLRIKHQEELTELHKKRGELAQLVIDLNNQMQQK
DREMQMNEAKIAECLQTISDLETECLDLRSKLQDLEVANQTLKDEYDALQITFTALEEKL
RKTTEENQELVTRWMAEKAQEANRLNAENEKDSRRRQARLQKELAEAAKEPLPVEQDDDI
EVIVDETSEHTEETSPVRAISRAATKRLSQPAGGLLDSITNIFGLSESPLLGHHSSSDAA
RRRSVSSFPVPQDNVDTHPASGKDVRVPTTALCVFDAHDGEVNAVQFSPGSRLLATGGMD
RRVKLWDAFGDKCEFKGSLSGSNAGITSIEFDSAGAYLLAASNDFASRIWTVDDYRLRHT
LTGHSGKVLSAKFLLDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVM
SGHFDKKIRFWDIRSESVVREMELLGKITALDLNPERTELLSCSRDDLLKVIDLRTNAIK
QTFSAPGFKCGSDWTRVVFSPDGSYVAAGSAEGSLYVWSVLTGKVEKVLSKQHSSSINAV
AWSPSGVHVVSVDKSSKAVLWAQP
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcgggcctccgcgctgccgacttcccccgctggaagcgccacattgcggaggag
ctgaggcgccgggaccggctgcagaggcagtcgttcgaggagatcatcctgcaatataac
aagttgctggaaaagtcggatcttcattcagtgttggcccagaaactacaagctgaaaag
catgatataccaaacaggcatgaaataagtcctggacatgatggcacatggaatgacagt
caactacaagaaatggctcagctgaggattaaacaccaggaagaactgactgaattgcac
aagaaacgtggggagttagctcagttggtgattgacctgaacaaccaaatgcagcagaag
gacagggagatgcagatgaatgaagcaaaaattgcagaatgtttgcagacgatctctgac
ttggagacagagtgcttggacctacgcagcaagcttcaagaccttgaggtagccaaccag
accctgaaggacgaatacgatgccctgcagatcacttttactgcgttggaggagaaactg
aggaaaactactgaagaaaaccaggagctggtcaccagatggatggccgagaaagcccag
gaagccaaccgcctcaatgcagagaacgaaaaggactccaggagacggcaagcccggctg
cagaaagagcttgctgaagcagcaaaggaaccactgccagttgaacaggatgatgacatt
gaagtcattgtggatgagacctcagagcacacagaggagacctcgcctgttcgagctatc
agcagagcagccactaagcgactctcgcagcctgctggaggccttctggattctatcact
aatatctttggtctgtccgagtctccccttttggggcaccattcttcttctgatgctgcc
aggagacgctctgtctcttcctttccagtcccccaggataatgtggatactcatcctgct
tctggtaaagatgtgagggtaccaactactgccttatgtgtctttgatgcacatgatgga
gaagttaatgctgtacaattcagtccaggttcccggttactggccacaggaggcatggac
cgcagggttaagttatgggacgcatttggagacaaatgtgagttcaagggctccctgtct
ggtagtaatgctggaattacaagcattgaatttgatagtgctggggcttacctcttagca
gcttcaaatgattttgcaagccgaatctggactgtggatgattatcgattacggcacacg
ctcacaggacatagtgggaaagtgctctctgctaagttcctgctggacaatgcacggatc
gtctcaggaagtcatgaccggacgctcaaactctgggaccttcgcagcaaagtctgcata
aagacagtgtttgcaggatccagttgcaatgatattgtctgcacagagcagtgcgtaatg
agtggacattttgacaagaaaattcgtttctgggatatccggtcagagagtgtggttcga
gaaatggagctattggggaagatcactgccttggatctaaacccagaaaggactgaactt
ctgagctgttcccgtgatgacctgttgaaagtcattgatctgcggacaaatgccatcaag
cagacgttcagtgcacctggattcaagtgcggctctgactggactagagttgtcttcagc
cctgatggcagttacgtggcagcaggctcagctgagggctctctctatgtctggagtgtg
cttacagggaaagtggagaaggttctttcaaaacagcacagctcctccatcaacgcggtg
gcgtggtctccctccggtgttcatgttgtcagtgtggacaaaagcagcaaagctgtgctg
tgggcacagccttga
DBGET
integrated database retrieval system
