Marmota marmota marmota (Alpine marmot): 107139462
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Entry
107139462 CDS
T09644
Symbol
Vps4b
Name
(RefSeq) vacuolar protein sorting-associated protein 4B
KO
K12196
vacuolar protein-sorting-associated protein 4
Organism
mmma
Marmota marmota marmota (Alpine marmot)
Pathway
mmma03250
Viral life cycle - HIV-1
mmma03272
Virion - Hepatitis viruses
mmma04144
Endocytosis
mmma04217
Necroptosis
Brite
KEGG Orthology (KO) [BR:
mmma00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
107139462 (Vps4b)
03272 Virion - Hepatitis viruses
107139462 (Vps4b)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
107139462 (Vps4b)
09143 Cell growth and death
04217 Necroptosis
107139462 (Vps4b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mmma04131
]
107139462 (Vps4b)
03400 DNA repair and recombination proteins [BR:
mmma03400
]
107139462 (Vps4b)
Membrane trafficking [BR:
mmma04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT-III complex
107139462 (Vps4b)
DNA repair and recombination proteins [BR:
mmma03400
]
Eukaryotic type
Check point factors
Other check point factors
107139462 (Vps4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
Vps4_C
MIT
AAA_lid_3
AAA_16
TIP49
AAA_14
AAA_5
RuvB_N
AAA_22
IstB_IS21
AAA_25
DUF815
AAA_18
AAA_2
AAA_17
nSTAND3
RNA_helicase
AAA_24
NPHP3_N
AAA_33
PhoH
AAA_7
AAA_28
Mg_chelatase
NACHT
Parvo_NS1
ResIII
KAP_NTPase
TPR_1
bpMoxR
DUF5113
ABC_tran
Sigma54_activat
MCM
Viral_helicase1
Motif
Other DBs
NCBI-GeneID:
107139462
NCBI-ProteinID:
XP_015337808
Ensembl:
ENSMMMG00000002671
UniProt:
A0A8C5YPY4
LinkDB
All DBs
Position
Unknown
AA seq
444 aa
AA seq
DB search
MASAGANLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVIKYEAQGDKAKQSIRA
KCTEYLDRAEKLKEYLKKKEKKPQKPVKEGQPSPADEKGNDSDGEGESDDPEKKKLQNQL
QGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGK
SYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLC
GSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPL
PEAHARAAMFKLHLGATQNSLTEADFRDLGKKTDGYSGADISIIVRDALMQPVRKVQSAT
HFKKVRGPSQADPNSIVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSN
TKPTVNEHDLLKLKKFTEDFGQEG
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atggcatctgctggggccaaccttcagaaagcaatagatcttgctagcaaagcagcacaa
gaagacaaagctgggaattatgaggaagcccttcaactctatcaacatgctgtacagtat
tttctccatgtaattaaatatgaagcacagggtgataaagccaagcagagtattagggca
aagtgtacagaatatcttgatagagcagagaaactgaaggaatatctgaagaagaaggag
aaaaaaccacagaagccagtaaaagagggacagccaagtccagctgatgagaaggggaat
gacagtgatggggaaggagaatctgatgatcctgaaaaaaagaaactacagaatcaactt
caaggtgccattgttatagagcgaccaaatgtgaaatggagtgatgttgctggtcttgaa
ggagcaaaagaagcacttaaagaggctgtgatattgccgattaaatttcctcatcttttt
acaggcaaaaggaccccttggagaggaatcctattatttggcccacctggaacaggaaaa
tcctatttagccaaagcagtagcaacagaagcaaacaactcaacatttttttcaatatct
tcctctgaccttgtttctaagtggctaggtgaaagtgaaaaactagttaagaacttattc
cagcttgccagagagaacaagccttctattattttcattgatgaaattgactctctctgc
ggttcaagaagtgaaaatgaaagtgaagctgcacgaagaattaagactgagttcctggtt
caaatgcaaggggttggtgtggacaatgatggaattttggttctgggagctacaaatata
ccctgggttctggattctgccattcgacgaagatttgagaaacgaatttatattcctttg
ccggaagcccatgcccgagcagcaatgtttaaattacacttgggcgccactcaaaatagc
cttacagaagctgatttccgagatcttgggaagaaaaccgatggctactcaggagcagat
ataagcatcattgtacgtgatgcacttatgcaacctgttagaaaagtgcagtcagctacg
catttcaaaaaggttcgtggaccttcccaagctgatcctaacagcattgtagatgatctg
ctgacaccgtgctctccaggcgatcccggtgccattgaaatgacatggatggatgtccct
ggagataaacttctggaaccagttgtttccatgtcggatatgttacggtcgctatcgaat
acaaaacctacagtcaatgaacatgacttgttgaagttaaagaagtttacagaagatttt
ggccaagaaggctaa
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