Marmota marmota marmota (Alpine marmot): 107140180
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Entry
107140180 CDS
T09644
Symbol
Smarcc2
Name
(RefSeq) SWI/SNF complex subunit SMARCC2 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
mmma
Marmota marmota marmota (Alpine marmot)
Pathway
mmma03082
ATP-dependent chromatin remodeling
mmma04714
Thermogenesis
mmma05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
mmma00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
107140180 (Smarcc2)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
107140180 (Smarcc2)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
107140180 (Smarcc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmma03021
]
107140180 (Smarcc2)
03036 Chromosome and associated proteins [BR:
mmma03036
]
107140180 (Smarcc2)
Transcription machinery [BR:
mmma03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
107140180 (Smarcc2)
Chromosome and associated proteins [BR:
mmma03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
107140180 (Smarcc2)
PBAF complex
107140180 (Smarcc2)
GBAF(ncBAF) complex
107140180 (Smarcc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
Motif
Other DBs
NCBI-GeneID:
107140180
NCBI-ProteinID:
XP_048663471
Ensembl:
ENSMMMG00000013803
LinkDB
All DBs
Position
Unknown
AA seq
1132 aa
AA seq
DB search
MINHYLGLFFFPFSAFSQYIQAEPPTNKSLSSLVVQLLQFQEEVFGKHVSNAPLTKLPIK
CFLDFKAGGSLCHILAAAYKFKSDQGWRRYDFQNPSRMDRNVEMFMTIEKSLVQNNCLSR
PNIFLCPEIEPKLLGKLKDIIKRHQGTVTEDKNNASHVVYPVPGNLEEEEWVRPVMKRDK
QVLLHWGYYPDSYDTWIPASEIEASVEDAPTPEKPRKVHAKWILDTDSFNEWMNEEDYEV
NDDKNPVSRRKKISAKTLTDEVNSPDSDRRDKKGGNYKKRKRSPSPSPTPEAKKKNAKKG
PSTPYTKSKRGHREEEQEDLTKDMDEPSPVPNVEEVTLPKTVNTKKDSESAPVKGGTMTD
LDEQEDEGMETTGKDEDESSTGNKGEQTKNPDLHEDNVTEQTHHIIIPSYAAWFDYNSVH
AIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLAGDVCAIMR
VHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTPSGLVPLQPKTPQGRQVDADTK
AGRKGKELDDLVPETAKGKPELQSSASQQMLNFPDKGKEKPTDMQNFGLRTDMYTKKNVP
SKSKAAASATREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPY
LEDSEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVASAAAKSALEEFSKMKEEVP
TALVEAHVRKVEEAAKVTGKADPAFGLESSGIAGTTSDEPERIEESGTDEARAEGQATDE
KKEPKEPREGGVVEEEAKEKTSEAPKKDEEKGKEGDSEKESEKSDGDPIVDSEKEKEPKE
GQEEILKEVVESEGERKTKVERDIGEGNLSTAAAAALAAAAVKAKHLAAVEERKIKSLVA
LLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLADRQAFHMEQLKYAEMRARQQ
HFQQMHQQQQQPPPTLPPGSQPIPPSGAAGPPTVHGLAVASASVAPAPAGSGAPPGSLGP
SEQIGQAGPTAGPQQPQPTGAPQPGAVPPGVPPPGPHGPSPFPNQQTPPSMMPGAVPGSG
HPGVAAQSPAIVAAVQGNLLPSASPLPDPGTPLPPDPTAPSPGTVTPVPPPQ
NT seq
3399 nt
NT seq
+upstream
nt +downstream
nt
atgataaaccattatctgggtctatttttctttcctttctctgccttttcccagtatata
caagctgaaccacctactaacaagtccctgtctagtctggtcgtacagttgctacaattt
caggaagaagtttttggcaaacatgtcagcaatgcaccgctcactaaactgccgatcaaa
tgtttcctagatttcaaagcaggaggctccttatgccacatacttgcagctgcctacaaa
ttcaagagtgaccagggatggcggcgttacgatttccagaatccatcacgcatggaccgc
aatgtagaaatgttcatgaccattgagaagtctttggtacagaataattgcctgtctcga
cctaacatttttctgtgcccagaaattgagcctaaattgctggggaaattaaaggacatt
atcaagagacaccagggaacagtcactgaggataagaacaatgcctcccatgttgtgtat
cccgtcccagggaacctagaagaagaggaatgggtacgaccagtcatgaagagggataag
caggttcttctgcactggggctactatcctgacagttatgacacatggatcccagccagt
gaaattgaagcatctgtggaagatgccccaactcccgagaaacctaggaaggttcatgct
aaatggatcctagacacagactccttcaatgaatggatgaatgaggaagattatgaagta
aatgatgacaaaaaccctgtctctcgccggaagaaaatttcagctaagacattgacagat
gaggtgaatagcccagattcagatcgaagggacaagaaaggagggaattataagaagaga
aagcgctccccctctccttcaccaaccccagaagctaagaagaaaaatgctaagaaaggt
ccctcaacaccttacactaagtcaaagcgtggccacagagaggaagagcaagaagacctg
acaaaggacatggatgagccctctccagtccccaatgtagaagaagtgaccctgcccaaa
acagtcaatactaagaaggactcggagtcagccccagtcaaaggaggcaccatgactgac
ctagatgagcaggaggatgaaggcatggagaccacgggcaaggatgaggatgaaagcagt
acggggaacaagggggagcagaccaagaatccagacctgcatgaggacaatgtgactgag
cagacccaccacatcatcattcctagctatgctgcctggtttgattacaacagtgttcat
gccattgagcggagggctctccctgagttctttaacggcaagaataagtccaagactcca
gagatctacctggcctatcgaaacttcatgattgacacttaccgactgaaccctcaggaa
tatctcacctcgactgcctgccgtcggaacctggcaggtgacgtctgtgccatcatgagg
gtccatgccttcctagaacaatggggtcttattaactaccaggtggatgctgagagtcga
ccaaccccaatggggcctccacccacttctcacttccatgtcttggctgacacgccatca
gggctggtacctctgcagcccaaaaccccacagggccgccaggttgatgctgataccaag
gctgggcggaagggcaaagagctggatgacctggtgccagagacggctaagggcaagcca
gagctgcagagctctgcttcccaacaaatgctcaactttcctgacaaaggcaaagagaaa
ccaacagacatgcagaactttggactgcgcacagacatgtacacaaagaagaatgttccc
tccaagagcaaagctgcagccagtgctactcgagagtggacagaacaggaaaccctgcta
ctcctggaggccctggaaatgtacaaggatgactggaacaaagtatccgagcatgtggga
agccgtacgcaggacgaatgtatcttgcattttcttcgccttcccattgaagacccctac
ctggaagactcagaggcctccctgggccccctggcctaccagcccatccccttcagtcag
tcgggcaaccctgttatgagcacggttgcctttctggcctctgtcgtcgatccccgagtc
gcttctgcagctgcaaagtcagccctagaagagttttccaaaatgaaggaagaggtgccc
acagccttggtggaggcccatgttcggaaagtggaagaagcagccaaagtgacaggcaag
gctgacccagcttttggtctggaaagcagtggcattgcaggaaccacctccgatgagcct
gagcgcattgaggagagcgggaccgatgaggcacgggcagagggccaggccacagatgaa
aagaaggagcccaaggaaccccgagaaggaggggttgtagaggaggaagcaaaggagaaa
acaagtgaggctcccaagaaggatgaagagaaaggaaaagaaggcgacagtgagaaggag
tcagagaagagtgatggggacccgatagttgactctgagaaggagaaggaaccaaaggaa
ggacaggaggaaatattaaaggaagtggtggagtcggagggggaaaggaagacaaaggtg
gaacgggatattggtgagggtaacctctccactgctgccgctgctgctctggctgccgct
gcagtgaaggccaagcacttggctgctgttgaggaaagaaagatcaaatctttggtggcc
ctgctggtggagacccagatgaaaaaactggagatcaaacttcgacactttgaggagctg
gagacaataatggaccgggagcgggaagcactggagtatcagaggcagcagctcctagca
gaccgacaagccttccacatggagcagctgaagtatgcggagatgagggcacggcagcag
cacttccagcagatgcaccaacagcagcagcagccaccaccaaccctgcctccaggctcc
cagcccatacccccctcaggggctgctgggccacccacagttcatggcctagctgtggct
tcagcctctgtggcccctgctcctgctggcagtggggcccctcctggaagcttgggccct
tctgaacagattgggcaggcaggaccaacagcagggccacagcagccacaaccaactgga
gccccccagcctggggcagtcccaccaggggtacccccccctggaccccatggcccctca
ccgttccccaaccaacaaactcctccctcaatgatgccaggggcagtgccaggcagcggg
cacccaggcgtggcggcccagagccctgccattgtggcagctgttcagggcaacctcctg
cccagtgccagcccactgccagacccaggcactcccctgcctccagaccccacggcccca
agtccagggacagtcacccctgtaccacctccacagtga
DBGET
integrated database retrieval system
