Marmota marmota marmota (Alpine marmot): 107140593
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Entry
107140593 CDS
T09644
Symbol
Skic3
Name
(RefSeq) tetratricopeptide repeat protein 37 isoform X1
KO
K12600
superkiller protein 3
Organism
mmma
Marmota marmota marmota (Alpine marmot)
Pathway
mmma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107140593 (Skic3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmma03019
]
107140593 (Skic3)
Messenger RNA biogenesis [BR:
mmma03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
107140593 (Skic3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_19
TPR_8
TPR_16
TPR_14
TPR_17
TPR_12
TPR_CcmH_CycH
TPR_11
ANAPC3
Sel1
TPR_9
ARM_TT21_C
TPR_15
ARM_TT21_2nd
Fis1_TPR_C
TPR_5
ARM_TT21_5th
Sey1_3HB
Retrotran_gag_2
DUF7017
TPR_30
BTAD
PknG_TPR
TPR_20
Motif
Other DBs
NCBI-GeneID:
107140593
NCBI-ProteinID:
XP_015339208
Ensembl:
ENSMMMG00000005439
LinkDB
All DBs
Position
Unknown
AA seq
1564 aa
AA seq
DB search
MSSKEVKTALKSARDAIRNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQ
GAYKKAAELEPNQLLAWQGLASLYEKCNHINAKDDLPGVYQKLLDLYESVDKQKWCDVCK
KLVDLYYQEKKHLEVARTWHRLIKTRQEEGADNQELHQLWRKLTQLLAESMEDQNNETQQ
LLLTAFENALGLSDKIPSEDHQVLYRHFIQCLSKFPHETARLKKACEGMINIYPTIQYPL
EVLCLHLIESGNLTDEGQQYCCKLVEMNSKSGPGLIGLGIRALQDKKYEDAVRNLTEGLK
ESPLCTAGWYHLSEVQIKMHRPKEAVLSCNQALKNLDNHGVSGGSLYQKNLCLRLKAEAL
IKLSDYESSEEAICSLNQVSDANNIPGLLVLKSLAYLNKGLLDEATKIMEDLLSSYPDLA
EVHALEALIHFTKKDYLQAEKCFQRAFERDAEVAEYHYQLGLTYWFMGEETRKDKTKALT
HFLKAARLDPYMGKVFCYLGHYYKDVVGDKNRARGCYRKAFELDDTDAESGAAAVDLSVE
LEDMEAALAILTTVTQRASAGTAKWAWLRRGLYYLKAGQHSQAVADLQAALRADPKDFNC
WESLGEAYLSRGGYTTALKSFTKASEINPESTYSVFKVAAIQQILGKYKEAIAQYQLIIK
KKEDYVPALKGLGECYLMMAKAALVDYLDGKAVDYIEKSLEYFTWALQHRADVSCLWKLV
GDACTSLCAVSSSKVNVNILGVLLGQKEGKQALKKTELLHLGGRCYGRALKLMSTSNTWC
DLGINYYRQAQHLAEMGSSMNDLKELLEKSLHCLKKAVRLDSNNHLYWNALGVVACYSGV
GNYALAQHCFIKSVQSEQINAVAWTNLGVLYLANENIEQAHEAFKMAQSLDPSYLMCWIG
QALIAETVGSYDTMDLFRHTTELNMHTEGAIGYAYWVCTTLQDKSNRETELYQYNILQMN
AIPAAQVVLCKYVERIQNYAPAFTMLGYLNEHLQLKKEAADAYQRAMLLLQTEEDQDTYN
VTVRNYGRLLSSIGEYDKSIQAFKSIPLEELEDLIGFALALFMKGLYKESSKAYERALSV
AESEQDKAHILTALAITEYKQGKMDIAKSLLFKCSILKEPTIESLQTLCALGLVMQDATL
SKAALNELLKHIKHKDSDYHRCLLTSAIYALQGRSVAVQRQASKAVHSNPADPALWSLLS
RVVAQCAQRNAKGGAVAGNVAHILDSNHGKKALLYTAINQLAMGSSSAEDEKNIALKTIQ
KAALLSPGDPAVWAGLMASCHADDKLALVNNTQPKRMDLYLALLSAVSASIKGKEFLENY
NQSLERWSLSQAVTGLIDTGRVSEAEALCTKNLKNNPDQPAIILLLRQVQCKSLLESQKP
LPDAVLEELQKTVMSNSTSVPAWQWLAQVYQSQGMMGAAEMCYRKSLQVASQQGSWSGKL
SSLLKLALLALEICMANVSSDHWPSLVQEATTEALKLCFCPLAVFLQALLQFNRKMGARE
TRRLLERVVYQPGYPKSIVSAARWYLLRHLYFKNDYELIDVLVKNAETHRDTRALELNQK
LSSQ
NT seq
4695 nt
NT seq
+upstream
nt +downstream
nt
atgtccagcaaagaagtgaagactgctctaaaaagtgcaagagatgcaattagaaacaaa
gaatataaagaagctttgaaacattgcaagacagtcttaaaacaagagaaaaataactac
aatgcctgggtttttattggtgttgctgcagcagagctagaacaacctgatcaggcccaa
ggtgcctataagaaagctgctgaactagaaccaaaccaattactagcttggcagggttta
gcaagcttgtatgagaagtgtaatcacataaatgctaaggatgacttaccgggtgtttac
caaaaactcctggatctttatgaaagtgttgacaaacagaagtggtgtgatgtctgtaag
aaacttgtggatctctattaccaagaaaagaaacacctagaggtggctcgaacatggcac
agattgataaagacacggcaagaagaaggtgcagacaaccaggagcttcatcagctatgg
aggaaattgactcagttgctggctgagagtatggaagatcagaataatgaaacccagcaa
ttgcttttaactgcattcgagaatgccctgggcttatcagataagattcccagtgaagat
catcaagtactgtataggcatttcattcagtgtttatcgaaatttcctcatgagactgct
aggttgaagaaggcttgtgaaggaatgataaacatctatcccaccatacagtatccatta
gaagtgctctgtttgcatttaattgaatcaggaaatcttactgatgagggacagcagtat
tgttgtaagctagtggaaatgaattcaaaaagtggtccaggcctcattggcttaggcatt
agagcattacaagacaaaaaatatgaagatgctgttaggaatctaacagaagggctaaag
gaaagccctctctgcacagctggatggtatcatctctctgaagttcaaatcaaaatgcat
agacctaaggaagctgttctttcatgcaatcaagctctgaagaacctagataatcatggt
gtgtctggaggcagtctttatcagaagaacctttgtcttcgtttgaaagcagaagctttg
attaaactctcagattatgaatcttcagaggaagcaatttgttctctcaatcaggtttct
gatgcaaataatatcccaggacttttggttctcaaaagcttggcttatctgaacaaaggc
ttattagatgaagctacaaagattatggaagaccttctctcttcttaccctgacctagct
gaagttcatgcccttgaggctttgattcattttaccaaaaaggactatctacaagcagaa
aaatgttttcagagagcatttgagagagatgctgaagttgctgaatatcattaccagctt
gggttaacatattggttcatgggtgaagaaacaagaaaagataaaacaaaggctcttacc
cactttctgaaggctgcaagactggatccatacatgggcaaagttttctgctatttaggt
cattattacaaagatgtagtgggagataaaaacagagctcgaggatgttacaggaaagct
tttgaattagatgacactgatgctgaatctggagctgcagcagttgacttaagtgtggag
cttgaagatatggaagctgccttagctatcctaacaacagtaactcagagggcaagtgct
ggaacggcaaaatgggcctggcttcggcgaggactatactatttgaaagctggtcaacat
tcacaagcagtggctgatttacaggcagcattaagggcagacccaaaggacttcaattgt
tgggagtcattaggagaggcatacttaagcagaggtggctatacaacagccttgaagtcc
ttcacaaaagccagtgagatcaacccagaatccacatacagtgtgtttaaggttgcagca
atacaacaaatcctaggcaagtacaaggaggccatagctcaataccagctgattattaaa
aagaaagaagattacgtacctgctttgaaaggtttgggcgaatgctatctcatgatggca
aaagcagctctagttgattatcttgatgggaaagccgtagactacatagaaaaatccctg
gaatattttacttgggccctgcagcatcgagctgatgtatcctgcctttggaagctggtt
ggggatgcttgtaccagtctgtgtgcggtttcatcatctaaagtgaatgttaatatttta
ggggtccttctaggccagaaagaaggaaagcaagcattaaagaaaactgagctcctccat
cttggaggaaggtgttacggtcgtgcattaaaactgatgtctacatctaatacatggtgt
gatcttggaattaattattatcgccaagcacaacatctagcagaaatgggcagcagcatg
aatgatcttaaagaattgctagagaaatctttacattgtctgaaaaaggcagtgagactc
gacagtaataatcacttatactggaatgctcttggtgtagttgcatgttatagtggtgtt
ggaaattatgcccttgctcagcactgtttcatcaaatcagtccagtcagaacaaattaat
gctgtcgcgtggaccaatttgggagtgttataccttgcaaatgaaaacattgagcaagct
catgaagctttcaaaatggctcagtctcttgatccatcttatttaatgtgctggattgga
caagctcttattgcagagacagttggaagttatgataccatggatctcttcaggcacact
acagaactcaatatgcatactgagggagcaataggttatgcatactgggtctgcacaaca
ttgcaagataaaagcaacagagaaacagagctataccaatacaacatcctccagatgaat
gctattccagcagcacaagttgttttgtgtaaatatgtggaaagaattcagaattatgct
ccagctttcacaatgttgggttacttaaatgaacatctacaactgaaaaaggaagcagca
gatgcgtaccaaagggcaatgttgttgttacagactgaagaagatcaagatacttataat
gttacagtaagaaattatggcagattgttgagttccattggtgaatacgacaaatctatc
caggcttttaagtcaatacctctcgaggagttagaagacctcataggctttgcattggct
ttatttatgaaggggctatataaagagagcagcaaagcatatgaaagagccttgtctgtt
gctgaatcagagcaagacaaagcccatatcttgacagctctggcaataacagaatataaa
caaggaaaaatggatatagccaagtcactgctattcaaatgctctattttaaaggaacca
accatagaaagccttcaaaccctgtgtgctctaggattggtaatgcaggatgctacactg
tctaaagcagcacttaatgaattactgaagcatatcaaacacaaagacagtgattatcac
aggtgccttcttacttcagctatttatgcactccaaggccgcagtgtggcagtgcaacgg
caagcgtctaaagctgttcacagtaacccagctgatcctgctctttggtctctattatcc
cgagttgttgctcagtgtgctcaacgaaatgcaaaggggggtgctgtagcaggaaatgtg
gctcatattctggactcaaatcatggaaagaaggcattactgtacactgcaataaatcag
ttggccatgggaagcagttcagcagaagatgaaaaaaatatcgcactaaagactatacag
aaggcagctctcctttctccaggtgaccctgctgtctgggctgggctgatggcatcctgt
catgctgatgataagctggctctagtgaacaacactcagccaaagaggatggatttatac
ttggcactgttatctgctgtttctgcttcaattaagggcaaggaatttcttgaaaattat
aaccaatctcttgaaaggtggtctctctcacaagctgtcactggtctgatagacacggga
agagtatctgaagctgaagctctctgcacaaagaatttaaaaaataacccggatcagcca
gctattatattacttttgagacaagttcagtgtaaatcactcctggagtcacaaaagcca
ctcccagatgcagtacttgaggaacttcaaaaaacagtcatgtccaactcaacttctgtt
ccagcttggcagtggttggcacaggtgtatcagtctcaaggaatgatgggtgctgcagaa
atgtgttacagaaagagtctacaagtagcatcccaacagggaagctggagtgggaaactc
tcaagtctattgaaactagcattgcttgccttagaaatctgtatggctaatgtttccagt
gatcactggccatccttggttcaagaggctacaactgaggccttgaaactttgtttctgc
ccactagctgtttttttgcaagctttgttacaattcaaccgcaaaatgggggcacgagag
actcggcgacttttggagagagtggtatatcaacctggatatccgaagtctattgtatca
gctgcacgttggtacctgctaagacacctgtacttcaaaaatgactatgagctcattgat
gtgttggtaaaaaatgctgaaactcacagagatacaagagcattggaactgaatcagaaa
ttgtcctcacagtaa
DBGET
integrated database retrieval system
