Marmota marmota marmota (Alpine marmot): 107141920
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Entry
107141920 CDS
T09644
Symbol
Pabpc4
Name
(RefSeq) polyadenylate-binding protein 4 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
mmma
Marmota marmota marmota (Alpine marmot)
Pathway
mmma03015
mRNA surveillance pathway
mmma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmma00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107141920 (Pabpc4)
09123 Folding, sorting and degradation
03018 RNA degradation
107141920 (Pabpc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmma03019
]
107141920 (Pabpc4)
03041 Spliceosome [BR:
mmma03041
]
107141920 (Pabpc4)
Messenger RNA biogenesis [BR:
mmma03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
107141920 (Pabpc4)
mRNA cycle factors
Stress granule specific factors
107141920 (Pabpc4)
Spliceosome [BR:
mmma03041
]
Complex C
Other components
Complex C specific factors
107141920 (Pabpc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_7
RRM_occluded
RRM_10
RBD_RDR6
RRM_3
POP1_C
ApbA_C
Motif
Other DBs
NCBI-GeneID:
107141920
NCBI-ProteinID:
XP_015340709
Ensembl:
ENSMMMG00000002940
UniProt:
A0A8C5YQW8
LinkDB
All DBs
Position
Unknown
AA seq
660 aa
AA seq
DB search
MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGEEIDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEK
HEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRP
PYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGNAPASRGLPTT
TQRVGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVPNLAPRAAVAAAAPRAVAPYK
YASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHS
NLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAVAAATS
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgaacgctgccgccagcagctaccccatggcctccctgtacgtgggcgacctgcactcg
gacgtcaccgaggccatgctgtacgaaaagttcagtcctgccgggcctgtgctgtccatc
cgggtctgccgcgatatgatcacccgccgctccctgggttatgcctacgtcaacttccag
cagccagccgacgctgagcgggccttggacaccatgaactttgatgtgattaagggaaag
ccaatccggatcatgtggtctcagagggatccctctttgagaaaatctggtgtgggaaac
gtcttcatcaagaatctggacaaatctatagataacaaggcactttatgatactttctct
gcttttgggaacattctgtcctgcaaggtagtgtgtgatgagaacggctctaagggttat
gcctttgtccacttcgagacccaagaggctgccgacaaggccatcgagaagatgaatggc
atgctcctcaatgaccgcaaagtgtttgtgggcagattcaagtctcgaaaagagcgggaa
gctgagcttggagccaaagctaaggaattcaccaatgtttatatcaaaaactttggggaa
gaaatagatgatgagagtctaaaagagctgttcagccaatttggtaagaccctaagtgtg
aaggtgatgagagatcccagtggaaaatccaaaggctttggctttgtgagttacgaaaaa
catgaagatgccaataaggcggtagaagagatgaatggaaaagaaatcagtgggaaagtc
atattcgtaggccgtgcacagaagaaagtagaacgccaggctgaattaaaaaggaaattt
gagcagctcaaacaggagagaattagtcgataccagggggtgaatctctacattaagaac
ttggatgacaccattgatgatgagaaattaaggaaagagttttctccttttggatcaatc
accagtgctaaggtaatgctggaggatggaagaagcaaagggtttgggtttgtctgcttc
tcatctcctgaagaggcaaccaaagcagtcactgaaatgaatggacgcattgtgggctcc
aagccactgtatgttgccttggcccagaggaaggaagagagaaaggctcacctgaccaac
cagtatatgcagcgggtagctgggatgagagcactccctgccaatgctatcttaaatcag
ttccagcctgcagctggtggctactttgtgccagcagttccacaggctcaaggaagacct
ccatattacacacctaaccagttagcacagatgaggcctaatccacgctggcaacaaggt
gggagacctcaaggcttccaaggaatgccaagtgctatacgtcagtctgggcctcgtcca
actcttcgccatctggctccaactggtaatgctccggcctctcgtggccttcctactacc
actcagagagtcgggtctgagtgcccggaccgcttggctatggactttggtggggctggt
gccgcccagcaagggctgactgacagctgccagtctggaggtgttcccacagctgtgcca
aaccttgcaccacgtgctgcagttgctgctgctgctcctcgggctgtagcaccatacaag
tatgcctctagtgtccgcagccctcaccctgccatacagcctctgcaggcaccccagcct
gcagtccatgtgcaggggcaagagcccctgaccgcctccatgcttgctgcagcaccaccc
caggaacagaagcagatgctgggcgaacgtttgtttccacttatccaaacaatgcattca
aacctggctggaaagatcacaggaatgctgctggagattgacaactctgagctgctacac
atgctggagtcccctgagtctctccgctccaaggtggatgaagctgtggcggttctacaa
gctcatcatgccaagaaagaagctgcccagaaggtgggcgctgttgctgctgctacctct
tag
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