Marmota marmota marmota (Alpine marmot): 107142282
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Entry
107142282 CDS
T09644
Symbol
Trpa1
Name
(RefSeq) transient receptor potential cation channel subfamily A member 1 isoform X1
KO
K04984
transient receptor potential cation channel subfamily A member 1
Organism
mmma
Marmota marmota marmota (Alpine marmot)
Pathway
mmma04750
Inflammatory mediator regulation of TRP channels
Brite
KEGG Orthology (KO) [BR:
mmma00001
]
09150 Organismal Systems
09157 Sensory system
04750 Inflammatory mediator regulation of TRP channels
107142282 (Trpa1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
mmma04040
]
107142282 (Trpa1)
Ion channels [BR:
mmma04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
107142282 (Trpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_4
Ank_3
Ank_5
Ion_trans
ANK_LRRK2
Acetate_kinase
DUF7694
Motif
Other DBs
NCBI-GeneID:
107142282
NCBI-ProteinID:
XP_015341198
Ensembl:
ENSMMMG00000004948
LinkDB
All DBs
Position
Unknown
AA seq
1121 aa
AA seq
DB search
MKRSLRKMLRPGEKEPQDVVYQGVEDDMDESKDSFKVVFEGNAHRLQNFIKNRRKLSKYD
DTNASPLHHAAAEGQVELMKTIISGSSCAVLNVMDDYGNTPLHWATEKNQVESVKFLLSQ
GANPNLRNGNMMAPLHIAAQGMYNEIIKVLTEHRSTNINLEGENGNTALLTTCAKDNSEA
LQILLNKGAKLCKSNKWGDFPVHQAAFSGAKKCMEIILKHGEEHGYSRQNHINFVNNKKV
SPLHLAVQSGDLEMIKICLDNGAHIDLVENGKCMALHFAATQGATEIVKLMISSYSGDSN
IVNALDGNRETLLHRASLFDHHELAEYLISAGADINSTDSEGRSPLILATASASWNIVNL
LLSKGARVDIKDHLGRNFLHLTVQQPYGLKNLQPEFMQMQHIKELVMDEDNDGCTPLHYA
CRQGVPVSVNNLLGFNVSIHSKSKDKKSPLHFAASYGRINTCQRLLQDISDTRLLNEGDL
HGMTPLHLAAKNGHDKVVQLLLKKGALFLSDHNGWTALHHASMGGYTQTMKVILDTNLKC
TDRLDEEGNTALHFAARQGHAKAVALLLSHDAEIILNKQQASFLHIALHNKRKEVVLTTI
RSKRWDECLQVFTHHSPSNRCPTMEMVEYLPECMKVLLDFCMIPSTEDKSCRDYHIEYNF
RYLQCPLELTKHATPIQGVIYEPLSVLNVMVQHNRIELLNHPVCKEYLLMKWCAYGFRAH
MMNLGSYCLGLIPMTFLVVNVKPGMAFNSTGIINETSDHLEILDSTNSYAIQVCMILVFL
SSIFGYCKEVVQIFQQKRNYFLDYNNALEWLIYTTSIIFVLPLFVNVPANVQWQCGAVAI
YFYWMNFLLYLQRFENCGIFIVMLEVILKTLLRSTVVFVFLLLAFGLSFYVLLNIQDAFS
SPLLSIIQTFSMMLGDINYRDAFLEPFLRNELAYPFLSFAQLIVFTMFVPIVLMNLLIGL
AVGDIAEVQKHASLKRIAMQVELHTSLEKKLPLWFLRKVDQKSTIVYPNRPRGGRILRLF
HYLFGSHEIRQEISNTDTCLEIEMLKQKYRLKDLTSLLEKQHELIKLIIQKMEIISETED
EDNHCSFQDKFKKERLELMSSRWNSVLRAVKTKTQCLEPRP
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcagcctgaggaagatgctacgccctggggagaaggagccccaggacgtagtc
tatcagggcgtggaggacgacatggacgaatccaaggactcctttaaggtggtttttgaa
ggaaatgcacatagattacaaaactttatcaagaaccgaaggaaattaagcaaatatgat
gataccaatgcttcacctttgcatcatgcagccgcagaaggtcaagtggaactaatgaag
acgatcatcagtggctcttcttgtgcagtgttgaatgtaatggacgattatggaaacacc
cctctgcactgggctacagaaaaaaaccaggttgaaagtgttaagtttcttctcagccaa
ggagcaaacccaaacctccgaaatggcaacatgatggcaccccttcacatagccgctcag
ggcatgtacaacgagatcataaaggtcttgactgagcacagaagtactaatattaatttg
gaaggagaaaatggaaacacagcattattaaccacatgcgccaaggataatagtgaagca
ctgcaaattttgttaaataaaggagctaagctatgtaaatccaataaatggggagatttc
cctgttcaccaagctgcattttctggtgccaaaaaatgcatggaaataatattaaagcat
ggtgaagaacatggatacagtcgacagaatcacattaactttgtgaataataagaaagtc
agcccgctccacttggcggttcaaagtggagacttggaaatgattaaaatatgcctggac
aatggtgcacacatagacctggtggagaatgggaagtgcatggcccttcattttgctgca
acccaaggagccactgaaatcgttaagttgatgatatcgtcttattctggtgacagcaat
attgttaatgcccttgatggaaatcgtgagaccctgcttcacagagcctcattatttgat
caccatgaactagcagaatacttaatttcagcgggagcagatatcaatagcactgattct
gaaggacgctctccacttatactagcaactgcttctgcatcttggaatattgtgaatttg
ctgctctctaaaggtgccagagtagacataaaggatcatcttggacgtaattttttacat
ttgactgttcagcaaccttatggattaaaaaatttgcaacctgagtttatgcagatgcaa
catatcaaggagttggtcatggatgaagacaatgatgggtgtactcctctacattatgca
tgtagacagggggtccctgtatctgtgaataacttgcttggtttcaacgtatccattcat
tccaaaagcaaagataaaaagtcacccctgcattttgcagccagttatgggcgtatcaat
acctgtcagaggctcctacaggacataagcgacacgaggctcttgaatgaaggcgacctt
cacggaatgacccctctccacctggcagcaaaaaatggacatgataaagtggttcaactt
cttctgaaaaaaggtgcattatttctcagtgaccacaatggctggacggctttgcatcat
gcttccatgggtgggtacactcagaccatgaaggtcattctcgataccaatttgaagtgt
acagaccggctagatgaagaagggaacactgctctgcactttgctgcccgccaggggcac
gccaaggcggtggcactgcttctgagccacgatgcagaaatcatccttaacaagcagcag
gcctcctttctgcacatcgcacttcacaataagaggaaggaggtggtgctcacgaccatc
aggagcaaaaggtgggatgaatgtcttcaggtttttactcatcattctccaagcaataga
tgtccaaccatggaaatggtagaatacctccctgaatgcatgaaagttcttttagatttc
tgtatgataccttccacagaagataagtcttgccgagactaccatattgagtacaatttc
agatatcttcagtgtccattggaattaaccaaacacgcaacaccaatacagggtgttata
tatgagcctctttcagtcctcaacgtcatggtacaacataaccgcatagagcttctcaat
caccctgtgtgtaaagaatatttactcatgaaatggtgtgcttatggatttagagcccac
atgatgaacctcggatcttactgtcttggactcatacctatgacctttcttgttgtaaat
gtaaagccaggaatggctttcaactcaactggaatcatcaatgaaactagtgatcatttg
gaaatattagactctacgaactcatatgctatacaagtttgtatgattttagttttttta
tcaagtatatttggatattgcaaagaagtggttcagattttccaacagaaaaggaattac
tttttggattataacaatgccttggaatggctaatctacacaactagcatcattttcgtg
ctgcccttatttgttaatgtgccggcgaatgtgcagtggcaatgtggagcagttgcgata
tacttctattggatgaacttcttattgtatcttcaaagatttgaaaattgtggaattttc
attgttatgttggaagtaattttgaaaactttgctgaggtctacagtcgtatttgtcttc
ttgcttttggcatttggtctcagcttttatgtccttctgaatatacaggatgccttcagc
tctccattactttccataatccagaccttcagcatgatgctaggagatatcaattaccga
gatgccttcctagaaccatttttgaggaatgaattggcatatccatttctgtcctttgct
caacttattgtcttcacaatgtttgtcccaattgtccttatgaatttacttatcggtttg
gcagtcggggacattgctgaggtacagaaacatgcatcattgaagaggatcgctatgcag
gtggaacttcacaccagcttagagaaaaagctaccactctggttcttacgcaaagtagat
cagaagtccaccatcgtgtatcccaacaggcccagaggtgggaggatattgcgtttattt
cattacctttttggtagccacgaaataagacaagaaatatcaaatactgatacatgttta
gaaatagaaatgttgaaacagaaataccggctgaaggacctcacttctctcttggagaag
cagcatgagctcatcaaactcatcattcagaagatggagatcatctctgagacagaagat
gaggataaccactgttcttttcaagacaagttcaaaaaagagcggttggaactaatgagt
agccgatggaattcagtgttgagagcagtcaagacaaaaacacagtgcctggagcccaga
ccctga
DBGET
integrated database retrieval system
