Marmota marmota marmota (Alpine marmot): 107142837
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Entry
107142837 CDS
T09644
Symbol
Pabpc1
Name
(RefSeq) polyadenylate-binding protein 1 isoform X2
KO
K13126
polyadenylate-binding protein
Organism
mmma
Marmota marmota marmota (Alpine marmot)
Pathway
mmma03015
mRNA surveillance pathway
mmma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmma00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107142837 (Pabpc1)
09123 Folding, sorting and degradation
03018 RNA degradation
107142837 (Pabpc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmma03019
]
107142837 (Pabpc1)
03041 Spliceosome [BR:
mmma03041
]
107142837 (Pabpc1)
Messenger RNA biogenesis [BR:
mmma03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
107142837 (Pabpc1)
mRNA cycle factors
Stress granule specific factors
107142837 (Pabpc1)
Spliceosome [BR:
mmma03041
]
Complex C
Other components
Complex C specific factors
107142837 (Pabpc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_occluded
RRM_10
RBD_RDR6
RRM_3
YflT
POP1_C
Motif
Other DBs
NCBI-GeneID:
107142837
NCBI-ProteinID:
XP_015341830
Ensembl:
ENSMMMG00000016183
LinkDB
All DBs
Position
Unknown
AA seq
533 aa
AA seq
DB search
MNFDVIKGKPVRIMWSQRDPSLRKSGVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL
NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVM
TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQM
KQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSP
EEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPA
PPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPF
STMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQH
LNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITG
MLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVNSATGVPTV
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
atgaattttgatgttataaagggcaagccagtacgcatcatgtggtctcagcgcgatcca
tcgcttcgcaaaagtggagtggtttgtgatgaaaatggttccaagggctatggatttgta
cattttgagacacaggaagcagccgaaagagctattgaaaaaatgaatggaatgcttcta
aatgatcgcaaagtatttgttggacgatttaaatctcgtaaagaacgagaagcagaactt
ggagctagggcaaaagagttcaccaatgtttacatcaagaattttggagaagacatggat
gatgagcgccttaaggatctctttggcaagtttggacctgccttaagtgtgaaagtaatg
actgatgaaagtggaaaatccaaaggatttggatttgtaagctttgaaaggcatgaagat
gcacagaaagctgtggatgaaatgaatggaaaggagctcaacggaaaacaaatttatgtt
ggtcgagctcagaaaaaagtggaacggcagacggaactaaagcgcaaatttgaacagatg
aagcaagataggatcaccagataccagggtgttaacctttatgtgaaaaaccttgatgat
ggtattgatgatgaacgtctccggaaggagttttctccatttggtacaatcactagtgca
aaggttatgatggagggtggtcgcagcaaagggtttggttttgtatgtttctcctcccca
gaagaagccacaaaagcagttacagaaatgaatggtagaattgtggccaccaagccactg
tatgtagctttagctcagcgcaaagaagagcgccaggctcacctcactaaccagtatatg
cagagaatggcaagtgtacgagctgtgcccaaccctgtaatcaacccctaccagccagca
cctccttcaggttacttcatggcagctatcccacagactcagaaccgtgctgcatactat
cctcctagccaaattgctcaactaagaccaagtcctcgctggactgctcagggtgccaga
cctcatccattccaaaatatgcccggtgctatccgcccagccgctcctagaccaccattt
agtactatgagaccagcttcttcacaagttccacgagtcatgtcaacacagcgtgttgct
aacacatcaacacagacaatgggtccacgtcctgcagctgctgctgctgcagctacccct
gctgtccgcaccgttccacagtataaatatgctgcgggagtccgcaatcctcagcaacat
cttaatgcacagccacaagttaccatgcaacagcctgctgttcatgtacaaggtcaggaa
cctttgactgcttccatgttggcatctgccccccctcaagagcaaaagcaaatgttgggt
gaacggctgtttcctcttattcaagccatgcaccctactcttgctggtaaaatcactggc
atgttattggagattgataattcagaacttcttcatatgcttgagtctccagagtctctc
cgttctaaggttgatgaagctgtagctgtactacaagcccaccaagctaaagaggctgcc
cagaaagcagttaacagtgccactggtgttccaacagtttaa
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integrated database retrieval system
