Marmota marmota marmota (Alpine marmot): 107143140
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Entry
107143140 CDS
T09644
Symbol
Trpc1
Name
(RefSeq) short transient receptor potential channel 1 isoform X1
KO
K04964
transient receptor potential cation channel subfamily C member 1
Organism
mmma
Marmota marmota marmota (Alpine marmot)
Pathway
mmma04360
Axon guidance
mmma04724
Glutamatergic synapse
mmma04726
Serotonergic synapse
mmma04929
GnRH secretion
mmma04972
Pancreatic secretion
Brite
KEGG Orthology (KO) [BR:
mmma00001
]
09150 Organismal Systems
09152 Endocrine system
04929 GnRH secretion
107143140 (Trpc1)
09154 Digestive system
04972 Pancreatic secretion
107143140 (Trpc1)
09156 Nervous system
04724 Glutamatergic synapse
107143140 (Trpc1)
04726 Serotonergic synapse
107143140 (Trpc1)
09158 Development and regeneration
04360 Axon guidance
107143140 (Trpc1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
mmma04040
]
107143140 (Trpc1)
Ion channels [BR:
mmma04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
107143140 (Trpc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRP_2
Ion_trans
Ank_2
Ank_4
LHD_TRPY1
MTR4-like_stalk
RIN1
Motif
Other DBs
NCBI-GeneID:
107143140
NCBI-ProteinID:
XP_015342233
LinkDB
All DBs
Position
Unknown
AA seq
743 aa
AA seq
DB search
MFVYCYLGDYYMVKKILEENSSGDLNINCVDVLGRNAVTITIENENLDILQLLLDYGCQS
ADALLVAIDSEVVGAVDILLNHRPKRASRPTIVKLMERIQNPEYSTTMDVAPVILAAHRN
NYEILTMLLKQDVSLPKPHAVGCECTLCSAKNKKDSLRHSRFRLDIYRCLASPALIMLTE
EDPILRAFELSADLKELSLVEVEFRNDYEELARQCKMFAKDLLAQARNSRELEVILNHTS
SDEPLDKRGLLEERMNLSRLKLAIKYNQKEFVSQSNCQQFLNTVWFGQMSGYRRKPTCKK
IMTVLTVGIFWPVLSLCYLIAPKSQFGRIIHTPFMKFIIHGASYFTFLLLLNLYSLVYNE
DKKNTMGPALERIDYLLILWIIGMIWSDIKRLWYEGLEDFLEESRNQLSFVMNSLYLATF
ALKVVAHNKFHDFADRKDWDAFHPTLVAEGLFAFANVLSYLRLFFMYTTSSILGPLQISM
GQMLQDFGKFLGMFLLVLFSFTIGLTQLYDKGYTPKEQKDCVGIFCEQQSNDTFHSFIGT
CFALFWYIFSLAHVAIFVTRFSYGEELQSFVGAVIVGTYNVVVVIVLTKLLVAMLHKSFQ
LIANHEDKEWKFARAKLWLSYFDDKCTLPPPFNIIPSPKTICYLISSLSKWICSHTSKGK
VKRQNSLKEWRNLKQKRDENYQKVMCCLVHRYLTSMRQKMQSTDQATVENLNELRQDLSK
FRNEIRDLLGFRTSKYAMFYPRN
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atgtttgtatattgttatttaggtgactattatatggttaaaaagattttggaggaaaac
agttcaggtgacttgaacataaattgcgtagatgtgcttgggagaaatgctgttaccata
actattgaaaacgaaaacttggatatactgcagcttcttttggactacggttgtcagtcc
gcagatgcacttttggtggcaatcgactctgaagtagtgggagctgttgatatactactt
aatcatcgaccaaaacgggcatcaagaccaactatagtaaaactaatggaacgaatccag
aatcctgagtactcaactactatggatgtcgcacctgtcattttagctgctcatcgtaac
aactacgagattcttacaatgctgctaaaacaggacgtttctctacccaagccccatgca
gttggctgtgaatgtacattgtgttctgcaaaaaacaaaaaggatagcctccgacattcc
aggtttcgtcttgatatatatcgatgcttggccagtccagctctaataatgttaacagaa
gaggatccaatcctaagagcatttgaacttagtgctgatttaaaagaactaagccttgtg
gaggtggaatttaggaatgattatgaggaactagcccgacaatgcaaaatgtttgctaaa
gatttgcttgcacaagcccggaattcacgtgagttggaagttatcctaaaccatacttct
agtgatgaacctcttgacaaacggggactactggaagaaagaatgaatttaagtcgtcta
aaacttgcaatcaaatataaccaaaaggagtttgtctcccagtctaactgccaacagttc
ctgaacactgtttggtttggacagatgtcaggttatcgacgtaaacccacctgtaagaag
ataatgactgttttgacagttggcatcttttggccagttttgtcactgtgttatttgata
gctcccaaatctcaatttggcagaatcattcatacaccttttatgaaatttattattcat
ggagcatcatatttcacattcttgctgttattgaatctgtactctctcgtctacaatgag
gataagaaaaacacaatggggccagcccttgaaagaatagactatcttcttatactgtgg
attattgggatgatttggtccgacattaaaagactttggtatgaagggttggaagacttt
ttagaagaatctcgtaatcaactcagttttgtcatgaattctctttatttggcaaccttt
gctctcaaagtggttgctcacaataagtttcatgattttgctgatcggaaggactgggat
gcattccatcctacgcttgtggcagaagggctttttgcatttgcaaatgttctgagttat
ctacggctcttttttatgtatacaaccagctctatcttgggtccattacagatttcaatg
ggacagatgttacaagattttggaaaatttctcggaatgttccttcttgttttgttttct
ttcacaattggactgacacagctctatgataaaggctatactccaaaagaacagaaagac
tgtgtgggcatcttctgtgaacagcaaagcaatgataccttccattcgttcattggcact
tgctttgctttgttctggtatattttttccttagcacatgtggcaatctttgtcacaaga
tttagctatggagaagagttgcagtcctttgttggagccgttattgttggtacatacaat
gtcgtagttgtgattgtgcttacgaaactgctggtagcaatgcttcataaaagctttcag
ttgatagcaaatcatgaagacaaagaatggaaatttgctcgagcaaagttgtggcttagc
tactttgatgacaagtgtacattaccaccacctttcaacatcattccttctccaaagact
atttgttatctgattagtagcctcagtaagtggatttgctctcatacatcaaaaggcaag
gtcaaacggcaaaacagtttaaaggaatggagaaatttgaaacaaaagagagatgaaaac
tatcaaaaagtgatgtgctgcttagtacatcgttacttgacttccatgagacagaagatg
caaagtacagatcaggcaactgtggaaaatctaaatgaactgcgccaagatctgtcaaaa
ttccgaaatgaaataagagatttgcttggctttcggacttctaaatatgctatgttttat
ccaagaaattaa
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