Marmota marmota marmota (Alpine marmot): 107143710
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Entry
107143710 CDS
T09644
Symbol
Ddx39b
Name
(RefSeq) spliceosome RNA helicase DDX39B isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
mmma
Marmota marmota marmota (Alpine marmot)
Pathway
mmma03013
Nucleocytoplasmic transport
mmma03015
mRNA surveillance pathway
mmma03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mmma00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107143710 (Ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
107143710 (Ddx39b)
03015 mRNA surveillance pathway
107143710 (Ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmma03019
]
107143710 (Ddx39b)
03041 Spliceosome [BR:
mmma03041
]
107143710 (Ddx39b)
Enzymes [BR:
mmma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107143710 (Ddx39b)
Messenger RNA biogenesis [BR:
mmma03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
107143710 (Ddx39b)
Spliceosome [BR:
mmma03041
]
Complex C
Other components
EJC/TREX
107143710 (Ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
107143710 (Ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-GeneID:
107143710
NCBI-ProteinID:
XP_015342895
Ensembl:
ENSMMMG00000009186
UniProt:
A0A8C5ZBF2
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLDQLDMRRDVQEIFRMTPHEKQVMMFSATLGKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaatgatgtggacaatgagctcttggactatgaagatgatgaggtggaaact
gcagctgggggagatggagctgaggctcctgccaagaaggatgtcaagggctcctatgtc
tccatccatagctctggctttcgggacttcctgctcaagccagagttactccgggctatt
gttgactgtggctttgagcatccatcagaagtccagcatgaatgtatccctcaggccatt
ctgggaatggatgtcctgtgccaggccaaatcaggcatgggaaagacagcagtgtttgtg
ttggccacactgcaacagctggagccagttactggacaggtgtccgtgctggtgatgtgt
cacactagggagttggcttttcagatcagcaaggaatatgagcgcttttctaaatacatg
cccaatgtcaaggttgcagttttttttggtggtctgtctatcaagaaggatgaagaggtg
ctgaagaagaactgcccgcatatcgtcgtggggactcctggccgcatcctagccctggct
cgaaataagagcctcaacctcaaacatattaaacactttatcttggatgaatgtgataag
atgcttgaccagctcgacatgcgtcgggatgtccaggaaatttttcgcatgaccccccat
gagaagcaggtcatgatgttcagtgctaccttgggcaaagagatccgtccagtctgccgc
aagttcatgcaagatccaatggagatcttcgtggatgatgagacgaagttgacgctgcac
gggttgcagcagtactacgtgaaactgaaggacaacgagaagaaccggaaactctttgac
cttctggatgtccttgagttcaaccaggtggtgatctttgtgaagtctgtgcagcggtgc
atcgccctggcccagctcctagtggagcagaactttccagccattgccatccaccgtggg
atgcctcaggaggagaggctttctcggtatcagcagtttaaagattttcaacgacggatt
cttgtggccaccaacctatttggccgaggcatggacattgagcgggtgaacattgccttt
aactatgacatgcctgaggattctgacacctatctacatcgggtggccagagcaggtcgc
tttggcaccaagggcttggctatcacatttgtgtcagatgagaatgacgccaagattctt
aatgatgtgcaggaccgctttgaggtcaacatcagtgagctgcctgatgagatagacatc
tcctcctacattgaacagacgcggtag
DBGET
integrated database retrieval system
