Marmota marmota marmota (Alpine marmot): 107143804
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Entry
107143804 CDS
T09644
Symbol
Col11a2
Name
(RefSeq) collagen alpha-2(XI) chain isoform X3
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
mmma
Marmota marmota marmota (Alpine marmot)
Pathway
mmma04820
Cytoskeleton in muscle cells
mmma04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
mmma00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
107143804 (Col11a2)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
107143804 (Col11a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
mmma00536
]
107143804 (Col11a2)
Glycosaminoglycan binding proteins [BR:
mmma00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107143804 (Col11a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
107143804
NCBI-ProteinID:
XP_015343047
Ensembl:
ENSMMMG00000024229
UniProt:
A0A8C6AFH1
LinkDB
All DBs
Position
Unknown
AA seq
1655 aa
AA seq
DB search
MERCSRCHRLLLLLPLVLGLSAAPGWAGAPSVDVLRALRFPSLPDGVRKARGICPSHVAY
RVSRPDQLSAPTRQLFPEGFPKDFSLLTVVRTRPGLQAPLLTLYSAQGVQQLGLELGRPV
RFLYEDQTGRPQPQAQPVFRGLSLADGKWHRVAVAVKGQSVTLIVDCKKRVTRPLPRSAR
PVLDTRGVVIFGARILDEEVFEGDVQELLIVPGVQAAYQSCEQKDLECEGSHRERPQNQQ
PHRAQRSPKQQPSRLHRPQNQEPQQQPTESLYYDYEPPYSDVMTTGTTPDYQAALGPRGL
KGEKGEPAVLEPGMLVEGPPGPEGPAGLAGPPGIQGNPGPVGDPGERGPPGRAGLPGSDG
APGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPL
GQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGEPGVKGDRGFD
GLPGLPGEKGHRGDTGAQGLPGPPGEDGDRGDDGEIGPRGLPGESGPRGLLGPKGPPGIP
GPPGVRGMDGPHGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPRGKPGLP
GMPGSDGPPGHPGREGPPGIKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGED
GFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLP
GYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAK
GTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPP
GPPGVVGPQGAAGESGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPA
GLRGFPGERGLPGTAGGPGLKGNEGPAGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPP
GAAGEKGVPGEKGPIGPTGRDGIQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNK
GEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLP
GPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSP
GVQGEPGVKGPRGERGEKGESGQPGEAGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEG
GPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGTPGPEGRQGEKGAKGDP
GAVGAPGKTGSVGPAGPAGKPGPDGLRGLPGAVGQQGRPGATGQAGPPGPVGPPGLPGLR
GDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGETGIPGASGPIGPGGPP
GLPGPAGPKGAKGATGPAGPKGEKGVQGPPGHPGPPGEVIQPLPIQMPKKTRRSVDGGRL
MQEDEAMPTGGAPGSPRGLEEIFGSLDSLREEIEQMRRPTGTQDSPARTCQDLKLCHPEL
PDGEYWVDPNQGCARDAFRVFCNFTAGGETCVTPRDDVTQFSYVDSEGSLVGVVQLTFLR
LLSVSAHQDVSYPCSGASREGPLRLRGANEDELSPETSPYVKEFRDGCQTQQGRTVLEVR
TPVLEQLPVLDASFSDLGAPPRRGGVLLGPVCFMG
NT seq
4968 nt
NT seq
+upstream
nt +downstream
nt
atggagcggtgcagccgctgccatcgcctcctcctgctcctacctctggtgctggggctc
agcgctgccccgggctgggcaggtgcaccctctgtggatgtgctccgggccctgaggttt
ccctccctccctgatggtgtccggaaggcaaggggcatctgtccatctcatgtggcctac
agagtgtcgcgacctgatcagcttagtgcacccacccgccagctcttcccagaaggtttt
cccaaagatttctctctgctgactgttgtccggacccgtcctggcctccaggctcccctc
ttgactctctacagtgcccagggtgtccaacagctgggtctggagcttggacgacctgtt
cgctttctatatgaagaccagactggacggcctcaaccccaggcccaaccagtcttccga
ggcctcagtctagctgatggcaagtggcaccgtgtggctgtggcagtgaaaggccagtct
gtcaccctcattgttgactgcaagaagcgagtcacccggccccttccccgaagtgctcgt
cctgtgttggatacccgtggagtggtgatctttggtgcccgtatcctggatgaagaagtc
tttgagggtgatgtccaggagcttctcattgttccaggagtccaagccgcctaccaatcc
tgtgaacaaaaggatctggaatgtgaagggagccacagggagagacctcagaaccagcag
cctcacagagcccagagatctccaaagcagcaaccatcaagacttcataggccacaaaac
caggaaccccagcagcagcccactgagtctctctactatgactacgagcccccctattcc
gatgtgatgactactgggacgacccctgattatcaggctgcccttggaccccgggggctg
aagggagaaaagggtgagcctgcagtgctggaacctggtatgcttgtggagggaccccct
ggcccagaaggccctgcgggattggctggtcctcctggcatccaggggaacccaggccca
gttggagaccctggagagaggggccctcctggccgagcaggacttcctggatctgatggg
gcccctggccctcctggcacatccctcatgctcccattccggtttggtagtggtggaggt
gacaagggccctgtggtggcagcccaagaagctcaggcccaggcgattctgcagcaggca
cggctggcgctccgtggaccccctggccccatgggatacacaggccgtcctggacctctg
ggacagcctgggagccccggcctaaaaggagaatctggagacctaggacctcaggggcct
agaggacctcagggtctcacaggccctcctggcaaggctgggcgaaggggacgagcaggt
gctgatggagcccgaggaatgcctggagaacctggagtgaagggtgaccgaggttttgat
ggactcccaggactacctggggagaaaggccataggggtgatactggtgcccagggcctt
cctgggccccctggtgaagatggagatcggggagatgatggggagattgggcctcggggg
ctgcctggagagtcgggaccccgaggacttcttggtcccaaaggcccccctggtattcct
gggcccccgggagtccgaggcatggatggtccccacggccccaaagggagcttgggaccc
cagggagagccaggacctcctggacaacagggcactcctgggacccagggtctccctggg
cctcagggtgccatcggccctcatggagagaagggtcctcgagggaaaccagggctccct
ggcatgcctggctcagatggacccccgggtcaccctgggagggaaggtccccctggaatc
aaaggaaaccagggtccttcgggacctcagggtcctctaggttacccaggacctcgaggt
gtcaagggtgtggatggaattcggggtctgaagggtcataagggtgaaaagggtgaggac
ggctttcctgggttcaaaggtgacataggtgtgaaaggtgacaggggtgaggttggagtc
cctggttccaggggagaagatggccccgaagggccgaagggacgcactggacctactgga
gaccctgggccccctggtctcatgggtgaaaagggcaagctgggtgttcctggtcttcct
ggctaccctggacgacagggtcccaagggatctctgggatttcctggttttcctggagcc
agtggagagaagggagcccggggcctgtctggaaaatcaggacctcggggagaacgggga
cccacgggtccacggggtcagcgggggccccgaggtgccactgggaagtctggagctaag
ggaacatcaggtggtgatggcccccatggcccccctggagagaggggtctccctggacca
cagggcccaaatggatttcctggccccaaaggccccccaggcccccctgggaaagatggg
ctgccaggacatccaggccagagaggagaagtgggtttccaagggaagacgggcccacct
ggccctcctggagtggtgggacctcagggagcagcaggagaaagcggccccatgggtgag
aggggtcacccaggccccccagggcctcctggagagcagggactgcctggcacagctggg
aaagaaggcacaaagggtgaccctggtccccctggagccccagggaaagatggtcctgct
ggactaaggggcttcccaggagagcgaggcctcccgggcactgctggtggacctggtttg
aaggggaatgaaggtccggctggcccccctggccctgcaggctcccctggggagcgaggt
gcagcaggatctgggggacccattggtcccccagggcgtccaggtccacaaggtccccct
ggagcagcaggcgagaagggcgtcccgggagagaaaggccccattggtcccactggccgt
gatgggatacagggtcctgtggggcttcctggtcctgctggacctccgggtgtggctgga
gaggatggagacaagggtgaggttggagacccaggtcagaagggcaccaaagggaacaag
ggcgaacatggccctcctggaccccctgggcccattggtcctgtggggcagcctggagca
gcgggagcagatggggagcctggagctcgggggccccagggacactttggagccaaaggt
gatgaaggaacaagaggattcaatgggcccccaggacccattggccttcagggcttgcca
ggcccctctggggagaaaggagaaacaggagacgtgggtcctatgggcccacctggcccc
ccaggacctcgaggcccagctggacccaatggtgctgacggcccacaaggtcccccagga
ggtgttgggaacctgggcccccctggagagaagggggagccaggagagtcagggtctcca
ggggtccagggagagccaggtgtcaagggtccacgtggggaacgtggagagaaaggagag
tcggggcagccaggagaggcaggaccaccagggcctaaaggccccacaggcgatgatggc
cccaaagggaatcctggtcctgttggctttcctggtgaccctggcccccctggggaaggt
ggccctcggggccaggatggtgctaagggtgaccgaggagaagacggcgagccaggacag
cctggatcccctggacccactggggagaatggaccccctggaccacttggaaagcggggt
cctgctggcacgcctggtccagaggggcgacaaggagagaagggagccaagggggatcct
ggtgctgtgggtgcccccgggaagacaggctctgtgggtcctgcaggcccagcaggcaag
cctggccctgatggtctgagggggctcccaggtgcagtgggtcaacaagggcgtcctgga
gccacaggccaggctgggcccccaggtcctgtgggacccccagggcttcctggcctccga
ggtgatgctggagccaagggagagaagggtcacccaggtctcattggactgatcgggccc
cctggagagcaaggagagaagggtgatcgaggacttcctggccctcagggctcccctgga
cagaagggagagacgggcatcccaggagcatctggtcccattggtcctggagggccccct
ggtctccctggacctgctggccccaaaggagccaaaggagccacaggcccagctggaccc
aagggagagaagggcgtccagggtcctccaggacacccgggccctccgggtgaggtgatc
caaccgctgcccatccagatgcccaagaagactcgacgctcagtggatggaggccgcctg
atgcaggaagacgaggccatgccaacagggggtgccccaggcagtcctagggggctggag
gagatctttggctcacttgactccctgagggaggagattgagcagatgaggcgaccaaca
gggacccaggacagccctgctcgcacctgccaggacctgaagctgtgccatcccgagctg
cctgatggagagtactgggtggaccccaaccagggctgtgctcgggatgctttccgggtt
ttctgcaactttaccgcaggaggggagacgtgtgtgacacccagggacgacgtcacacag
ttctcttacgtggactcagagggctccctggtaggtgtggtccagcttaccttcctgcgc
ctgctcagtgtctcggcccatcaggacgtctcttacccctgctctggagcatcgcgtgaa
ggtcccctgaggctccggggggccaatgaggatgagctaagcccagagaccagcccctat
gtcaaagaattccgagacggctgtcagacacagcaaggccggacggtgctggaagtgcgc
acgcctgtgctggagcagctgccggtgctggacgcctccttctcagacctgggggcccct
ccgaggcggggaggggtgctgctggggcctgtctgcttcatgggctag
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integrated database retrieval system
