Marmota marmota marmota (Alpine marmot): 107144737
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Entry
107144737 CDS
T09644
Symbol
Ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46 isoform X4
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
mmma
Marmota marmota marmota (Alpine marmot)
Pathway
mmma03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mmma00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107144737 (Ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mmma03041
]
107144737 (Ddx46)
Enzymes [BR:
mmma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107144737 (Ddx46)
Spliceosome [BR:
mmma03041
]
Complex A
U2 snRNP components
U2 related factors
107144737 (Ddx46)
Complex B
107144737 (Ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
CdAMP_rec
FAM176
Motif
Other DBs
NCBI-GeneID:
107144737
NCBI-ProteinID:
XP_015344054
Ensembl:
ENSMMMG00000005700
LinkDB
All DBs
Position
Unknown
AA seq
1032 aa
AA seq
DB search
MGRESRHYRKRSASRGRSGSRSRSRSPSDKRSKRGDDRRSRSRDRDRRRERSRSRDKRRS
RSRDRKRLRRSRSRERDRSRERRRSRSRDRRRSRSRSRGRRSRSSSPGNKSKKAENRSRS
KEKTESGESSKEKKKDKDDKEDEKEKDAGNFDQNKLEEEMRKRKERVEKWREEQRKKAME
NIGELKKEIEEMKQGKKWSLEDDDDDEDDPAEAEKEGNEMEGEELDPLDAYMEEVKEEVK
KFNMRSVKGGGGNEKKSGPTVTKVVTVVTTKKAVVDSDKKKGELMENDQDAMEYSSEEEE
VDLQTALTGYQTKQRKLLEPVDHGKIEYEPFRKNFYVEVPELAKMSQEEVNVFRLEMEGI
TVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGS
GKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVY
GGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFE
PQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVI
EEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDS
IINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAY
TFITEDQARYAGDIIKALELSGTAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKF
DETEQALANERKKLQKAALGLQDSDDEDAAVDIDEQIESMFNSKKRVKDMAAPGTSSVPA
PTAGNAEKLEIAKRLALRINAQKNLGIESQVDVMQQATNAILRGGTILAPTVSAKTIAEQ
LAEKINAKLNYVPLEKQEEERQDGGQNESFKRYEEELEINDFPQTARWKVTSKEALQRIS
EYSEAAITIRGTYFPPGKEPKEGERKIYLAIESANELAVQKAKAEITRLIKEELIRLQNS
YQPTNKGRYKVL
NT seq
3099 nt
NT seq
+upstream
nt +downstream
nt
atgggcagggagtcgcgccattatcggaaacgatcagcatcccggggacgttctggaagt
agatctagaagtcgctcaccttcagataaaagaagtaaacgtggagatgacagacgatct
agaagcagagatagagatagaaggagagagaggtctcggagcagagataaaagaagatct
cggtcaagggacagaaagcgtctaaggcgttccagaagtagagagagagacagaagccga
gagcgaagaagatctcgcagccgagacaggagacgctcaaggagtagaagccggggccgg
cgatcccgatcttccagtcctggcaataaaagcaagaaagctgagaataggtctaggtcc
aaagagaaaacagaaagtggggaaagttctaaagagaagaaaaaagacaaagatgataag
gaagatgaaaaagaaaaagatgctggcaactttgaccagaataaactggaggaagaaatg
agaaagcgaaaggaaagagttgaaaaatggcgagaagagcagcgtaaaaaggccatggaa
aacataggggaactgaaaaaagaaattgaagagatgaaacaagggaaaaaatggagttta
gaagatgatgatgatgatgaggatgatcctgcagaagctgaaaaggaaggaaatgaaatg
gagggtgaggaattagatccattagatgcgtacatggaagaagtgaaagaagaagtgaaa
aagtttaatatgagaagtgtaaaaggtggagggggaaatgaaaagaagtctgggccaaca
gtcacaaaagttgtcactgtcgtgacaaccaaaaaggcagttgtagattctgataagaag
aaaggtgagctgatggagaatgaccaggatgccatggagtattcttcagaggaggaagaa
gttgatcttcagacagctcttacaggctatcagaccaaacagagaaaacttttggaacca
gttgatcatggaaaaattgaatatgagccattcagaaaaaacttttacgttgaagtccca
gaactagcaaaaatgtctcaagaggaggtgaatgtatttcgattggaaatggagggtatc
acagtcaaaggaaaaggttgccccaaaccaattaagtcttgggtccagtgtggaatttcc
atgaagatcttaaattctctcaaaaagcatgggtatgaaaagcccacaccaatccaaacg
caagcaattcctgctataatgtctggacgagatttgattggcattgccaaaacaggaagt
ggaaagaccattgcttttctgttgcccatgtttagacacattatggatcagaggtcatta
gaagaaggagaagggccaatagctgtcatcatgactccaactcgagaactggctttacag
attactaaagaatgtaagaagttttcgaagactttgggacttagagtggtctgtgtttat
ggaggaacaggaatcagtgagcagattgctgagctgaaaagaggtgctgaaattattgtt
tgcacacctggtcgaatgattgacatgttagcagctaacagtggtcgggtcacaaatctt
cgaagagtgacatacgttgttttggatgaagcagatagaatgtttgacatgggttttgaa
ccacaggtcatgcgcattgtggataatgtccgtcctgatcgacagacggttatgttttca
gctactttccccagagctatggaagctttggctcgtagaatcttgagtaaacccattgaa
gtacaggttggaggcaggagtgtggtttgctcagatgtggagcaacaagtgattgtgatt
gaagaagaaaagaaattcttgaagttacttgagcttctaggccattatcaagaatcagga
tctgtcattatatttgtggataagcaggaacatgctgatggtctattaaaggatttaatg
agagcatcttacccttgcatgtctcttcatggaggtattgatcaatatgacagagacagt
attataaatgactttaagaatgggacctgcaaacttcttgtggccacctctgttgctgcc
cgaggtctagatgtgaaacatttgattcttgtagtaaattacagctgccccaatcattat
gaggattatgtgcacagagcaggacggactggaagagcaggcaataaaggatatgcctat
acttttatcacagaagatcaagctcgctatgctggtgacataattaaagctcttgaattg
tcagggactgcagtgcctcctgatctagagaaactttggagtgatttcaaagatcaacag
aaagctgaaggaaaaataattaaaaagagtagtgggttctctggtaagggattcaaattt
gatgaaaccgaacaagctttggctaacgagaggaagaaattacaaaaagcggctcttggt
ctgcaagattcagatgatgaggatgctgcagttgatattgatgaacaaattgaaagcatg
tttaattcaaagaagagagtaaaggatatggctgctcctggaacatctagtgttcctgct
ccgactgcaggaaatgctgagaaattagaaattgctaagagattggctcttagaatcaat
gctcagaagaatttgggcatcgagtctcaggtagatgtgatgcaacaagccaccaatgca
atcctcagaggtggcaccattctggctcccactgtgtctgcaaaaaccattgcagagcaa
cttgctgaaaagatcaatgccaagctcaattatgtgcctttagaaaaacaagaagaggag
agacaggatggtggacagaatgagtcttttaagagatatgaggaagaattggagatcaat
gacttcccacagacggctaggtggaaagttacctcaaaggaagctctacagagaattagt
gaatattctgaagctgcaattacaataagaggaacatacttccctcctggcaaagaaccc
aaggaaggagagcggaaaatttacttggccatcgaaagtgctaatgaactggctgtgcag
aaagcaaaggcagaaatcaccaggctcataaaggaagaactaatccgactgcaaaattca
taccaaccaacaaataaaggaagatacaaagtcttataa
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integrated database retrieval system
