Marmota marmota marmota (Alpine marmot): 107145080 Help Entry 107145080         CDS       T09644                                  Symbol Smarcc1 Name (RefSeq) SWI/SNF complex subunit SMARCC1   KO K11649   SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C Organism mmma  Marmota marmota marmota (Alpine marmot) Pathway mmma03082   ATP-dependent chromatin remodeling mmma04714   Thermogenesis mmma05225   Hepatocellular carcinoma Brite KEGG Orthology (KO) [BR:mmma00001]  09120 Genetic Information Processing   09126 Chromosome    03082 ATP-dependent chromatin remodeling     107145080 (Smarcc1)  09150 Organismal Systems   09159 Environmental adaptation    04714 Thermogenesis     107145080 (Smarcc1)  09160 Human Diseases   09162 Cancer: specific types    05225 Hepatocellular carcinoma     107145080 (Smarcc1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:mmma03021]     107145080 (Smarcc1)    03036 Chromosome and associated proteins [BR:mmma03036]     107145080 (Smarcc1) Transcription machinery [BR:mmma03021]  Eukaryotic type   RNA polymerase II system    Coactivators     BAF/PBAF complex      107145080 (Smarcc1) Chromosome and associated proteins [BR:mmma03036]  Eukaryotic type   Chromatin remodeling factors    BAF complex     107145080 (Smarcc1)    PBAF complex     107145080 (Smarcc1)    GBAF(ncBAF) complex     107145080 (Smarcc1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  SWIRM-assoc_2 SWIRM-assoc_3 SWIRM SWIRM-assoc_1 Myb_DNA-binding Myb_DNA-bind_6 HEAT_GCN1 Chromo BRCT_2 SpeFL Motif Other DBs NCBI-GeneID:  107145080 NCBI-ProteinID:  XP_015344399 LinkDB All DBs Position Unknown AA seq 1184 aa AA seqDB search MATVGRGLAAPSSARPLRGQAQDARPAPQARWLLGPTLRQAGGRTRAPSRARWSPPGSHG RLGFVALAVNPRLDLDRAQKGAEPRAGLPVLRRLRVSPGLRAAAAPAAEVSGFASQSDEL YKARERTRWRVLLTGKRSKNPAAFWRQKTSRISRRKPAGEALGATAGAGGTGGAAAAAGL AVYRRRTGPAGSLGESETVSQLDSVRVWLGKHYKKYVHADAPTNKTLSGLVVQLLQFQED AFGKHVTNPAFTKLPAKCFMDFKAGGTLCHILGAAYKYKNEQGWRRFDLQNPSRMDRNVE MFMNIEKTLVQNNCLTRPNIYLIPDIDLKLANKLKDIIKRHQGTFTEEKSKASHHIYPYP SSQEDEEWLRPVMRKDKQVLVHWGFYPDSYDTWVHSNDVDAEIEDPPIPEKPWKVHVKWI LDTDIFNEWMNEEDYEVDENRKPVSFRQRISTKNEEPVRSPERRDRKASANARKRKHSPS PPPPTPTESRKKSGKKGQANLYGKRRSQKEEDEQEDLTKDMEDPTPVPNIEEVVLPKNVN PKKDSENTPVKGGTVADLDEQDEETMTTGGKEDEDPGKGDQSRSVDPGEDNVTEQTNHII IPSYASWFDYNCIHVIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTA CRRNLTGDVCAVMRVHAFLEQWGLVNYQVDPESRPMAMGPPPTPHFNVLADTPSGLVPLH LRSPQVPAAQQMLNFPEKNKEKPIDLQNFGLRTDIYSKKTLAKSKGASAGREWTEQETLL LLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLENSDASLGPLAYQPVPFSQ SGNPVMSTVAFLASVVDPRVASAAAKAALEEFSRVREEVPLELVEAHVKKVQEAARASGK VDPTYGLESSCIAGTGPEEPEKLEGGEEEKMETDPEAQQPEKAENKVENETDEGDKVQDG ENEKNSEKEQDSEVSEDIKSEEKETEENKELTDTCKERESDTGKKKVEHEISEGNVATAA AAALASAATKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALEQ HRHFYIFLYFESPSTGQIPGPGSMMPGQPLPGRMIPTVAANIHPAGSGPAPPGMPPIPGN ILGPRVPLTAPNGMYPPPPQQQPPPPADGIPPPPAPGPPASATP NT seq 3555 nt NT seq  +upstreamnt  +downstreamnt atggcaacggtaggccgaggcctggctgcccccagctcggcccggccgcttcgcgggcag gcccaggatgcccggcctgctcctcaggcccgctggctgctcggccccactctccgccag gccggcggccggacccgggctccgtctcgcgcgaggtggtctccgcccggctctcatggt cgtcttggtttcgtggcgctggccgtcaacccgcggctggacctcgatcgggcccaaaag ggcgcggaaccgcgggcgggacttccggtgctccggcggctcagggtctccccgggtctt cgtgctgctgctgctccagccgcggaggtgagcggttttgcctctcaaagtgatgaattg tacaaagctagggaaaggactaggtggcgcgtgctgctcacggggaaacggtctaagaat cccgcagccttctggaggcagaagaccagtcggatctcgcgccgcaagcccgcgggtgaa gcgctgggggcgacggcgggcgcagggggcacagggggagctgcggcggccgcgggccta gccgtctatcggcggaggacggggccagccggcagtctgggagagtccgagacggtatct cagctggactcagtgcgcgtctggctgggcaagcactacaagaagtatgttcatgcagat gctcctaccaataaaactctgtctggacttgtggtacagcttctccagttccaggaagat gcctttgggaagcatgtcactaatccggctttcaccaaactccctgcaaaatgtttcatg gatttcaaagctggaggcaccttgtgtcatattctcggggctgcttacaagtataaaaac gaacagggatggcggagatttgatctgcagaatccatcacgaatggatcgtaatgttgaa atgtttatgaacattgagaaaacattggtgcagaacaattgtctgaccagacccaacatc tacctcattccagacattgatctgaagttggctaacaaattgaaagatatcatcaagcga catcagggaacctttactgaggagaagtcaaaagcttcccaccacatttatccatatcct tcttcacaagaggatgaagaatggctgagaccggtgatgagaaaagacaagcaggtgtta gtacattggggcttctacccagacagctatgatacttgggtccatagtaatgatgttgat gctgaaattgaagatccaccaattccagaaaagccttggaaggttcatgtgaagtggatt ttagacactgacattttcaatgaatggatgaatgaggaggattatgaagtggatgagaac aggaagccagtgagttttcgtcagcgaatttcaacaaagaatgaagagccagtcagaagt ccagagagaagagatagaaaagcatcagctaatgctcggaagaggaaacattcaccttca cctccccctcccacacctacagaatctcggaagaaaagtgggaagaaaggccaagctaat ctttatgggaagcgcagaagtcagaaagaggaagatgagcaagaagaccttaccaaggac atggaagacccaacacctgtacccaatatagaggaggtggtactccccaaaaatgtaaac ccaaagaaagatagtgaaaatacacctgttaaaggaggaactgttgcagatctagatgaa caagatgaagaaacaatgacaacaggaggaaaggaagatgaagatcctggcaaaggtgat cagagtcggtcagttgaccctggtgaagataatgtgacagagcagactaatcacattatt attcccagctatgcatcatggtttgattataactgtattcatgtgattgaacggcgtgct cttcctgaatttttcaatggaaaaaacaaatccaagactccagaaatatacttggcatat agaaattttatgattgacacataccgtctgaacccccaagagtatttaaccagcactgct tgtcggaggaacttgactggagatgtgtgtgctgtgatgagggttcatgcctttttagag cagtgggggctcgttaattatcaagttgatccagaaagtcgacccatggcaatgggaccg cctcctactcctcatttcaatgtattagctgatactccctctgggcttgtgcctctgcat cttcgatcacctcaggtacctgctgctcagcagatgttaaattttcctgagaagaacaag gaaaaaccaattgatttgcagaactttggtcttcgtactgacatctactccaagaaaaca ttagcaaagagtaaaggtgctagtgctggaagagagtggacagaacaagagacccttcta ctcctggaggccctggagatgtataaggatgattggaacaaagtgtcagaacatgttgga agtcgtactcaggatgaatgcatcctccactttttgaggcttcccattgaggacccatac ctcgaaaattcagatgcttcccttgggcctctggcctatcagccagttcctttcagtcag tcgggaaatccagtcatgagtactgttgcttttttggcatctgtggtggacccacgtgtg gcatctgctgcagcaaaagcagctttggaggagttttctcgggtccgagaggaggtacca ctggagttggttgaagcccatgttaagaaagtacaagaggctgcccgagcctctgggaaa gtggatcctacctatggcttggagagcagctgtattgcaggcacagggcctgaagagcct gagaagcttgaaggaggtgaagaagaaaaaatggaaacagaccctgaagctcagcagcct gaaaaggcagaaaacaaagtggaaaatgaaacagatgaaggtgataaagtacaagatgga gaaaacgaaaaaaatagtgagaaggaacaggatagtgaagttagtgaagatatcaagtca gaagaaaaggagactgaagagaacaaggaactcactgatacatgtaaagaaagagaaagt gatactgggaagaagaaagtggaacatgaaatttctgaaggaaatgttgccacagcagca gcagctgctcttgcctcagctgctaccaaagccaagcatctggctgctgtggaagagaga aagatcaaatccctcgtagctctcctggttgagacacaaatgaagaaattagagattaaa cttcgacattttgaggagctggaaactatcatggacagagagaaagaggctttagaacaa cataggcatttctacatttttttatactttgaatctccttctacaggtcagataccagga ccaggttccatgatgcctgggcagcccttgccaggccgcatgattcccactgtggcagcc aacatccaccctgctgggagtggccctgcccctcctggaatgcctcctataccaggaaac atcttgggaccccgggtccccctcacagcaccaaatggcatgtatccccctccgccacag cagcagccaccaccacctgcagatgggattcctccacctcctgctccaggcccaccagcc tcggccactccttag

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