Marmota marmota marmota (Alpine marmot): 107146490
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Entry
107146490 CDS
T09644
Symbol
Slx4
Name
(RefSeq) structure-specific endonuclease subunit SLX4 isoform X1
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
mmma
Marmota marmota marmota (Alpine marmot)
Pathway
mmma03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
mmma00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
107146490 (Slx4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
mmma04121
]
107146490 (Slx4)
03400 DNA repair and recombination proteins [BR:
mmma03400
]
107146490 (Slx4)
Ubiquitin system [BR:
mmma04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
107146490 (Slx4)
DNA repair and recombination proteins [BR:
mmma03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
107146490 (Slx4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Slx4
BTB
Motif
Other DBs
NCBI-GeneID:
107146490
NCBI-ProteinID:
XP_048645210
Ensembl:
ENSMMMG00000007340
LinkDB
All DBs
Position
Unknown
AA seq
1745 aa
AA seq
DB search
MMDESDDDFKELCANFFQRVKKNGTKEVSGEKKTQKASNSTQIRNKLKKNKQSTTKSKTL
LGPAGKKPKLGSEDPSTKKPEATKLQENEQALSVNGEGGVLVPALNQPNLCGRAQSIQTE
NAPSGDSHLAPTCLTAAVPSPSKPRTAELVLQRMQQFKRADPERLRHASGECSVEAALEE
NSPQSPQEEMVTGNGYEARFPATDSDAAVALALQQEFGREAASAHNGSLEENGLFFCQMC
QKNLSAMNVTRREQHVNRCLDEAEKALKPSIPQIPECPICGKLFLSSKSRISHLKQCAVK
MEVGPQLLLQAARLQTAQLEAGGSLPVPSSGSHTRGLKRKGATNKKEPQKRRKVSKPSVP
SEDLLVAMALSRSEIEQCPAVPALILENAFSERMRPGAEKKSRKKKPPASPPQLLVQDSE
TTGRQIEDRVAQLLSEEVELSSTPPLPASRIFKEEWEEAGWRLQLPEGKRNFLWEGSALT
RAWAVESFYTMGLVPPIVPQQPAKEPELPLVLWEQPEPSVQKSPALHSSHPAGLGPRDPL
LSASQREHQALQDLMDLAEEGLSGSPWPCSGVAGIDSVPSSLPLTGFVLPFREKPPERGV
HTSVSLGLLAADFSAMVNNPHLSDVQFQMDSGEVLYAHKFVLYARCPLLIQYMNNEGFSA
VEDGDLTQRVLLSNVSFEAACAFLHYLYTADTSLPPCLVPALSSLALRFGVNDLVHLCEQ
VPVLMDSEGEQQEKEDENCDSRVENLQELLRAVWADEEEEETESHQEDRVQVNEAEMEEI
YEFAATQRKLLQRERETDTEKDSDYPGKDSPVAGPVLGRVQSDEQLEKQEQSELSGPGKE
EASATWGNAPHSLPLLPGLRSVSTGEAETHEQEVPTGAPGPSPSGGCQAGGKEGFLLHPV
KIHNHQQACSSTQGSELSQIMSSPEEQSGTVRERQVEMACPLAPQQISLPHPCYLLSQPP
GGRSPGQSQFHLDIGDPSPAASQSHGGASRVASPGSLSPLVPLRQKRDNSFLTSFTEPGH
WKGKGCSSMLEGKTKGVPISPEKSSPIDLTQSQPDHLSTSSQDLPSHLSKENEIILLLDS
DEELELEQTKTKSISNDLPEERKVLEFSPRSSELFSVIDVDADQECCSPLKEGAGIQREE
EEGELENQDALGRGRVPWLLCDQESSLHEDSTDTSWLVPATPLASKSRDCSSQTQITSLV
PRTPGDKMGRHTPSAASENRAAQEAAQSSVNTPQMSPVTPGASDSGRQVYRSPSGPHPRY
CSLSSPRAQQPAIGGLTDVTSRFQKLSPLGPFLPNQAAAGEVVEVGDSEDEQEVASHQGN
SSTLQDSDPPVPVDDCCWHVEPLSPIPIDHLNLERTGPLSTSSPSRQAHGALDSSDCHSP
GLPGTTPIRGSCAAHREPQQQSPQAGSSGSSRLSFLNTALWDNWDGEEQKSPEASPVAQT
PSAHRAQRLEGPETPKGANQKKNLPPKVPITPMPRYSIMETPLLKKELDRFGVRPLPKRQ
MILKLKEIFQYTHQTLESDSEDEIQSSQVPLEAPCSQTLTTETYRPSQAGHTQSKATAGP
RTQRSKGPTKAKGPRHPKHQPGESIPHPRKSAAEEPSPGPDGDAQLPASQESVATYVDSN
DSSFSSQSSSSCEFGATFESAGEDEEGEEAVSASQAAVQAVDTEEAVRCYIRSTPALYRK
VLTYQPLELAELQAELKQNGIRVATGKLLDVLDTHCITFTTAAARKEKLKQKGRRRVGRK
KGVWD
NT seq
5238 nt
NT seq
+upstream
nt +downstream
nt
atgatggatgagtcagatgatgattttaaagaactctgtgccaactttttccaaagggta
aaaaaaaatgggaccaaggaagtgtcaggagaaaagaagacccagaaggcctcaaacagc
actcagatcagaaacaaactgaaaaaaaacaaacaatccaccaccaagagcaaaacactt
cttggccctgcagggaagaaacctaaattaggcagcgaggaccctagcactaaaaagcca
gaggcaaccaagttgcaagaaaatgaacaagctctctctgtgaatggggagggaggagtg
cttgttcctgctctgaatcagcccaacctctgcggaagagcacagagcatccagacagag
aatgctcccagtggtgactcccaccttgctccaacctgtttgacagcagctgtgccaagt
ccctccaaaccccgcactgcagagctggttctccagcggatgcagcagttcaagcgagca
gaccctgagcgtttgaggcatgcttcaggagagtgctccgtggaggccgcactggaagag
aacagcccacaaagtcctcaagaggagatggtgacaggaaacgggtatgaggccaggttc
cctgccacagacagtgatgctgccgtggccttggccttgcagcaggagtttggaagggaa
gcagcatctgcgcacaatggtagcctggaggagaatgggttgttcttctgccaaatgtgt
cagaagaacctctcagccatgaacgtgacccggagggagcagcacgtgaacaggtgcttg
gatgaggctgaaaaggcactaaaaccttccatacctcagatccctgagtgcccgatttgt
ggcaaactgtttctcagctccaagagcagaatcagtcacctgaagcagtgtgcagtgaag
atggaggtgggcccccagctcctgctgcaggccgcgcggctgcagacagctcagttggag
gcaggcggcagtcttcctgtacccagctccggcagtcacactaggggtttgaaacggaaa
ggagccaccaacaagaaggagccacagaagaggcggaaggttagcaagcccagcgtgcca
tccgaggacctgctggtggccatggctctgtcccgatctgagatagagcagtgtccagct
gtgcctgcactcatactagaaaacgctttttctgagagaatgagaccaggagcagagaaa
aagagtcgcaagaagaaacccccggcatcccccccacagttgttagttcaggattctgag
accacaggtagacagattgaggaccgcgtggcccagctgctttcagaggaagttgagctg
tccagcacgccaccacttcctgccagcaggattttcaaggaagaatgggaagaggcaggc
tggcgtctacagctgcctgaaggaaagaggaactttctgtgggagggaagtgccctgact
agggcctgggctgtggagtccttttacaccatgggcctggtacctcccatcgtgccccag
cagccagccaaggaacctgagctaccactggtgctgtgggagcagccagagccaagcgtg
caaaagtcacctgctctccacagcagccaccctgcaggccttggccccagggacccgttg
ctctctgccagccagagggagcaccaagccctgcaggacctcatggacctggcagaggag
gggctgagtggcagcccatggccctgcagtggggttgcagggatagattcggtgcccagc
agccttccactgactggctttgtcctgccgttcagggagaagcctcctgagagaggtgtc
cacacttcggtctccctggggctgttggctgctgacttcagtgccatggtcaataaccca
cacctgagtgacgtccagttccagatggacagtggggaggtgctttatgcccacaagttt
gtgctttatgcccgatgtccacttctcattcagtatatgaacaatgaaggcttctctgct
gtagaagatggtgatctgacccagcgtgtcctactgagcaacgtgagcttcgaggcggcc
tgtgcattcctgcactatctttacacagcagatactagcttgcctccgtgcctggtccct
gccctgagctccttggccctcaggtttggtgtgaatgacctcgttcacctgtgtgagcag
gtgcctgtcctgatggactccgagggcgaacagcaggagaaggaagatgagaactgtgac
agcagagtggagaatctccaagagctcttgagggcagtgtgggcggatgaggaggaggag
gaaacagagagccaccaagaagacagagtgcaggtcaatgaagcagagatggaagaaatt
tatgaatttgcagctactcagcgaaagctactccagcgggagagagaaacagacacagag
aaggacagtgactaccccgggaaggacagtccagtggctgggcctgtgctgggaagggtc
cagagtgacgaacagttagaaaagcaagaacaatcggagttgtctgggcctggcaaagag
gaggcctcagccacctggggaaacgcaccacattcccttccgctgctcccgggcctgcgt
tcagtcagcacaggggaggcagagacccacgagcaagaggtgccaacaggggcacctggc
ccgagcccctctgggggctgccaggcagggggaaaagaaggcttccttttgcatccagtg
aagatccacaatcaccaacaggcctgttcatcaactcaaggatctgaactgtcccaaata
atgagcagccctgaggagcagagtggcactgtcagggagaggcaggtggagatggcctgt
cctctggctccacagcagatatccttgccacacccatgctacctcctgtcacagcccccc
ggaggcaggagtcctggccagtcacagttccaccttgacataggtgatccatccccagca
gcgtctcagtcacatggtggtgcttcccgggtggcctccccaggctcactgtccccactt
gtacctttaaggcagaagagggacaatagttttctcacttcattcacagagccaggtcac
tggaaaggcaaaggatgtagttccatgttagaaggcaaaaccaagggtgtcccgatttct
ccagaaaaatcttcacccattgacctgacccagtcacagcctgaccacttgagtaccagc
tcccaggacctcccatcccatttgagcaaagagaatgagattatccttttactggattca
gatgaagagttggaactggaacaaaccaaaacaaagtccatttctaatgatctcccagag
gaaaggaaagttctagaatttagccccaggtcctctgaactattttcagtcattgatgtt
gatgcagatcaggaatgttgcagcccactgaaggaaggagctgggatacagcgggaggaa
gaagagggagagctggaaaatcaggatgcattgggccgtggaagggtcccctggctgttg
tgtgaccaggagagcagcctccacgaggacagcacagacacctcatggctggtgcctgcc
accccactggccagtaaaagccgtgactgctcatcacaaacccagataacaagccttgtt
cccaggactccaggggacaagatgggtcggcacacgcccagcgccgcctcagaaaacagg
gccgctcaggaagctgcacagtcttcagtgaacacgccccagatgtcacctgtcacccca
ggagcctctgacagtggaaggcaggtctacagaagcccttccggtccccaccccaggtac
tgctcactttcttctccacgtgcacagcagcccgctataggaggcctcaccgatgtcacc
agcaggttccagaaactctcaccactggggccattcctgccgaatcaggctgcagcaggc
gaagtggtggaagttggggacagtgaagatgagcaggaagtggcctcccatcagggaaac
agcagtacactgcaggatagtgaccccccagttccagtggatgactgttgttggcatgtt
gagcccctctcaccaattccaattgaccacttgaacctcgaacggactggccccctgagc
accagcagtcccagcagacaggcccatggggctctagacagcagtgactgccactcccca
ggactccccggcaccactccaattcgaggaagctgtgctgcccatagagaacctcagcag
cagtccccacaggccggctcctcagggagcagcaggctcagcttcctgaacacagctctg
tgggacaactgggatggggaagagcagaagtctccagaggcttcgcctgtggcccagaca
ccaagtgcccaccgagctcagcggttagaagggccagaaacgccaaaaggtgctaatcag
aagaagaacttgccccccaaagtgcccataactccaatgccaaggtattccatcatggag
accccgttgctgaagaaagagctggacaggtttggagtccgccctctccctaaacgccag
atgattttgaaactgaaggagattttccagtacactcaccagaccctggagtctgactct
gaggatgagatccagtcctcacaagtgccactggaggcaccttgtagccagaccctgacc
actgagacctataggccttcacaggcaggccacacccagtctaaggccactgcaggtcct
aggacccaaagatccaaaggtcccactaaggccaagggcccccgacatccaaagcaccag
cctggtgaaagcattccgcacccaaggaagtcagcagctgaggagccatctccaggccct
gatggtgacgctcagctcccagcctcccaggaatccgtggccacctatgtggacagcaat
gacagctccttcagctcacagagttcttcctcctgtgagtttggagccacctttgagtct
gcaggtgaagacgaggagggtgaggaggcggtcagtgcatcacaggcagccgtccaggca
gtggacacggaggaggctgtgagatgctacatccgctccacgccagccctataccggaag
gtgctgacgtaccagccccttgagctggcagagctgcaggccgaactgaagcagaatggc
atccgcgtggccacaggcaagctgctggacgtcctagacacccactgcatcaccttcacc
accgctgcagcccggaaggagaagctcaagcagaaggggcgacggcgtgtgggcaggaag
aaaggggtgtgggattga
DBGET
integrated database retrieval system
