Marmota marmota marmota (Alpine marmot): 107146600
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Entry
107146600 CDS
T09644
Symbol
Trim56
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM56
KO
K12026
tripartite motif-containing protein 56 [EC:
2.3.2.27
]
Organism
mmma
Marmota marmota marmota (Alpine marmot)
Brite
KEGG Orthology (KO) [BR:
mmma00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
mmma04121
]
107146600 (Trim56)
Enzymes [BR:
mmma01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
107146600 (Trim56)
Ubiquitin system [BR:
mmma04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
107146600 (Trim56)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-B_box
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
RING_XB3-XBAT31
zf-C3HC4_4
zf-C3HC4_3
Phytase-like
Motif
Other DBs
NCBI-GeneID:
107146600
NCBI-ProteinID:
XP_048646053
LinkDB
All DBs
Position
Unknown
AA seq
656 aa
AA seq
DB search
MFSQGSSPSLLEALSSDFLACKICLEQLHTPKTLPCLHTYCQDCHRVVDLVGYRAGWYDE
EARERQAAQCPQHPGEALRFLCQPCSQLLCRECRLDPHLDHPCLPLAEAVRARRPGLEEL
LAGVDSSLVELEATRVAEKEALTRLREQAARVGTQVEEAAEGVLRALLAQKQEVLGQLRA
HVEAAEEAARERLAKLEGREQVARAAAAFARRVLSLGREAEILSLEGAIAQRLRQLQSSP
WTPGPVPCLLPQLELYPGLLDKNCHLLQLSFEEEQPLQEDGRGAAGPQGEEETQSQREHG
AKAERQGGGQPQGKDGAPAPKEDKAKTPQEDGAQAPKGDSTQPGQEEGGVQVERGCRSNK
KRKFKGRGKSMSREPSPALGPNLEGSGLLPRPIFFCSFPTRMPGDRRSPRITGLCPFGPR
EILVADEQNRALKRFSLNGDYKGTVPVPEGCSPCSVAALQSTVAFSAGARLYLISPDGEV
QWRRALSLTQASHAVAALPSGDRVAVSVAGHVEVYNMEGSLATRFIPGGKASRGQRALVF
LTTSPQGNFVGSDWQQNSVVVCDGLGQVIGEYKGPGLHGCQPGSLSVDKKGYIFLTLREV
NKVVILDPKGSLLGDFLTAYHGLEKPRVTTMVDGRYLVVSLSNGTIHVFRVRSPDN
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atgttttcccagggctcctcgccctccctgctggaggccctgagcagcgacttcctggcc
tgcaaaatctgcctggagcagctgcacacacccaagacgctgccctgcctgcacacctac
tgccaggactgccatcgcgtggtggacctggtgggctacagggccgggtggtacgacgag
gaggcccgggagcgccaagcagcccagtgtccccagcacccaggggaggccctgcgcttc
ctgtgccagccctgctcccagctgctgtgccgagagtgccgcctggacccccacctggac
cacccctgcctgcccctggctgaggcagtgcgggcccggaggccgggccttgaggagctt
ctggccggcgtggacagcagcctagttgagctggaagccactcgggtggccgaaaaggaa
gcactgacccggctgcgggagcaggctgccagggtggggactcaggtggaggaggcagcc
gagggcgtcctcagggccctcctggcccagaagcaggaggtgctggggcagcttcgggcc
cacgtggaggctgctgaagaggctgcccgggagaggctggccaagctagaaggccgggag
caggtggccagggcggcagctgcttttgctcggcgggtgctcagcctgggtcgggaggct
gagatcctttccctggagggggccattgcccagaggctccgacagctgcagagcagcccc
tggaccccggggccagtgccctgcctgctgccccagctggaactctaccctgggctgctg
gacaaaaactgccacctgctccagctctcttttgaggaggagcagcccctgcaggaggat
gggagaggtgcggcaggaccccagggggaggaagaaacccagagccagagggagcatgga
gccaaggccgagcggcagggtggaggccagccccagggtaaggatggagctccggccccc
aaagaggacaaagccaagacaccccaagaagatggagcccaagcccccaaaggagacagt
acccaaccaggccaagaagagggaggagtccaggtcgagaggggctgcaggtccaacaag
aagaggaagttcaaaggcaggggcaagtccatgtcccgggagcccagccccgccctgggg
ccaaacctggaaggctccggcctcctccccagacccatctttttctgcagcttccccacg
cgcatgcctggggacaggcggtctccccgaatcactgggctctgtccctttggtccccgg
gaaatcctggtggcagatgagcagaacagggctctgaaacgcttctcactcaacggcgac
tacaagggcaccgtgccggtccccgagggctgctccccgtgcagcgtggcagctctgcag
agcacagtggccttctcggctggcgcgaggctctatctcatcagccctgatggtgaggtg
cagtggcgccgggccctgagcctcacccaggccagccatgccgtggccgcgctgcccagt
ggggaccgggtggctgtcagtgtggcaggccacgtggaggtgtataacatggaaggcagc
ctggccacccggttcatccccgggggcaaggccagccggggccagcgggcactggtgttc
ctgaccaccagccctcagggcaattttgtggggtcagattggcagcagaacagcgtggtg
gtctgcgacgggctgggccaggtgattggggaatacaaggggccgggcttgcatggctgc
cagccgggctccctgtccgtggataagaagggctacatctttctgacccttcgagaagtc
aacaaggtggtgatcctggatcccaaggggtcacttcttggtgacttcctgacagcctac
cacggtctggaaaagccccgggtgaccaccatggtggatggcaggtacctggtggtgtcc
ctcagtaatgggaccatccatgtctttcgggttcgttctcctgacaattaa
DBGET
integrated database retrieval system
