Marmota marmota marmota (Alpine marmot): 107147361
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Entry
107147361 CDS
T09644
Symbol
Rc3h1
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
mmma
Marmota marmota marmota (Alpine marmot)
Brite
KEGG Orthology (KO) [BR:
mmma00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mmma03000
]
107147361 (Rc3h1)
04121 Ubiquitin system [BR:
mmma04121
]
107147361 (Rc3h1)
Transcription factors [BR:
mmma03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
107147361 (Rc3h1)
Ubiquitin system [BR:
mmma04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
107147361 (Rc3h1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-CCCH_UNK
zf-C3HC4_2
zf_CCCH_4
FYVE
zf-CCCH_4
Vesi_VP2
PaaA_PaaC
Baculo_IE-1
zf-RING_4
zf-RING_6
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
107147361
NCBI-ProteinID:
XP_015347281
Ensembl:
ENSMMMG00000017561
UniProt:
A0A8C5ZTV2
LinkDB
All DBs
Position
Unknown
AA seq
1131 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQVPEQQPITLCSGVEDTKHYEEAKKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGADQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSAAILPEE
GAVDLPSRKPPALPNGIVPAGNTVTQLIPRGTDPSYDSSLKPGKIDHLSSSAPGSPPDLL
ESVPKSISALPVNPHPVPPRGPADLPPMPVTKPIQMVPRGSQLYPAQADVYYQDPRGAAP
PFEPAPYQQGMYYTPPPCVSRFVRPPPSAPEPGPPYLDPYPPYLQDRVMNSQYGAQPQQY
PPMYPPHYDGCRVYPAQSYTREEIFRESPIPIEIPPAAVPSYVPESRERYQQVEGYYPVA
PHPTQIRPSYPREPPYSRLPPPPPQPHPSLDELHRRRKEIMAQLEERKVISPPPFAPSPT
LPPTFHQEEFLDEELKVAGKYKGNDYSQYSPWSCDTIGSYIGTKDAKPKDVVAAGSVEMM
NVESKGMRDQRLELQRRAVETSDDDLIPFGDRPTVSRFGAISRTSKTLYQGAGPMQAMAP
QGAPTKSINISDYSPYGTHGGWGGSPYSPHQNVTSQGHFSERERVSMPEVASHGKPLPSA
EREQLRLELQQLNHQISQQTQLRGLEAVSNRLVLQREANTLAGQPQLPPPPPKWPGMISS
EQLSLELHQVEREIGKRTRELSMENQCSLDMKTKLNTSKQAENGQPEPQNKVPAEDLTLT
FSDIPNGSALTQENISLLSNKTSSLNLSEDPEGGGDNNDSQRSGVTPSSAP
NT seq
3396 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacaatggacggatttcctctcctgcccaatttgcactcagact
ttcgacgaaacaattcgaaagcccatcagtttgggctgtggccatactgtctgtaagatg
tgcctgaacaaactccaccgcaaggcttgcccatttgaccagaccactatcaatacagac
attgagctccttcccgtgaactcagcattgctgcagctagtgggtgctcaggtccctgaa
cagcagcccattactttgtgtagtggggttgaagacacaaagcattatgaagaagccaag
aaatgtgtagaagaattagcattgtacctgaaaccgctcagcagtgctagaggagtgggt
ctgaatagcactacccagagtgttctgagtcgcccaatgcagaggaagcttgtgactctg
gttcactgccaactagtggaagaagaaggcaggattcgtgccatgagagctgctcgctct
ttaggtgaacgaacagttacagaactcattctccagcaccagaatcctcagcaactctct
tccaatctttgggcagcagtcagggctaggggctgtcaattccttggaccagcaatgcaa
gaggaagctctaaagctggttctactggccttagaagatggctctgctttgtcaagaaaa
gtactggttctttttgtggtgcaaaggttggagccacggtttcctcaagcctctaaaact
agcattgggcatgttgttcagctcctttacagagcctcctgcttcaaggtcaccaaacgt
gatgaagactcttctctgatgcagcttaaagaagaatttagaacctatgaagctctgcga
cgagagcatgactcccagatagtacagattgctatggaagcaggcttaaggattgcacca
gaccagtggtcctctttgctttatggagaccagtctcacaaatctcacatgcagtccatt
attgacaagttgcagaccccagcctcttttgctcagagtgttcaggaactaacaattgct
ctccagcggactggagacccagcaaacttgaaccgactaagaccccatttggaactatta
gcaaacattgacccaagtccagatgctcctcctcctacttgggaacagctagaaaatgga
ctggtagctgtgcgtacagttgtacatgggctggttgattatatacagaaccatagcaaa
aaaggagcagatcaacagcagcctccacagcatagcaaatataaaacatacatgtgtcga
gatatgaagcaaagaggaggatgccctcgtggtgccagctgtacatttgcacactcacaa
gaggaactggaaaaatttcgtaaaatgaacaaacgtctggttcccagaagacctctgagt
gcctctttgggtcagttgaatgaggtgggcctgccttctgcagccatccttccagaagaa
ggtgcagtggatctacctagcagaaaaccccctgctctaccaaatggaattgtgccagca
ggaaatacagtaacacaactgattccacgggggacagatcccagctatgattctagtctg
aaaccagggaaaatagatcatctgagcagtagtgctccaggatcccctcctgacctgcta
gaatctgtccctaagagtatttctgccttacctgtgaatccacatcctgtacctccaagg
gggccggcagatctgcctcccatgcctgtcaccaaaccaattcagatggtaccacgaggt
tctcagttatatccagcacaagcagatgtttattatcaggatcctcgaggagctgcccca
ccatttgaaccagcaccttatcagcagggtatgtactataccccaccaccatgtgtatcc
cgctttgttcgacctccaccatctgctcctgaacctggtcctccctacttggatccttat
ccaccctacctccaagatcgtgttatgaactctcagtatggcgcacagccacaacagtac
ccacctatgtacccacctcactatgatggctgtcgagtgtaccctgctcagtcttataca
agagaggaaattttccgagaaagccctatacccattgagattccacctgctgcagtacca
tcatatgtaccagagtccagagaaagataccagcaagtggagggttactatccagtagcc
cctcatcctactcagatcagaccttcgtatcccagagagcctccatatagccggcttcct
cctcctcctccccagccccatcctagtctagatgagctacatcgccgacgaaaggaaatt
atggctcaactggaggaaagaaaggttatctctccacctccttttgcaccttcaccaaca
ttgcctcccacattccatcaagaggaatttttggatgaagaattgaaggtagctgggaaa
tacaaaggaaatgattatagccaatactctccttggtcatgtgacaccatcggctcctac
attggaaccaaagatgcaaaacccaaagatgttgtggcagcagggagtgtggaaatgatg
aatgtggaaagtaaaggaatgagagaccagcgattggaacttcagagaagagcagtagaa
accagtgatgatgacctcatcccatttggagaccgaccaacagtatctcggtttggtgcc
atctctcgaacttccaaaacgctatatcagggtgctggcccaatgcaggctatggcacct
cagggagctcccacaaaatctattaacatttctgattacagtccatatggaacccacggt
ggctggggaggttctccatattcacctcatcaaaatgtaacttctcagggacacttcagt
gagagggagcgagtatccatgccagaagtagccagtcatggaaaaccccttccatctgct
gagagagaacagctacgactagaattgcagcaactgaaccatcagattagccagcagact
cagctacgcggattagaggccgttagtaacaggctggtgttgcagagggaagcaaacacc
ttggcgggacagccacagctgccgccgcctcctccaaagtggcctggaatgatctcaagt
gagcagttgagcttggaactgcatcaagtggaaagggaaattgggaagagaacccgggaa
ctaagtatggagaaccagtgttctctggacatgaaaaccaaattgaatacaagtaagcaa
gcagaaaatggacaaccagaaccacaaaacaaggttccagctgaggaccttacattgaca
ttcagtgatataccgaatggatcagccttgacacaagagaatatcagcctcctgtcaaac
aagaccagctctctgaacctatcagaggacccagagggaggaggagataacaatgactcc
cagagatccggagttactcccagttctgctccctaa
DBGET
integrated database retrieval system
