Marmota marmota marmota (Alpine marmot): 107148250
Help
Entry
107148250 CDS
T09644
Symbol
Smarca2
Name
(RefSeq) probable global transcription activator SNF2L2 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
mmma
Marmota marmota marmota (Alpine marmot)
Pathway
mmma03082
ATP-dependent chromatin remodeling
mmma04714
Thermogenesis
mmma05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
mmma00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
107148250 (Smarca2)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
107148250 (Smarca2)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
107148250 (Smarca2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmma03021
]
107148250 (Smarca2)
03036 Chromosome and associated proteins [BR:
mmma03036
]
107148250 (Smarca2)
Transcription machinery [BR:
mmma03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
107148250 (Smarca2)
Chromosome and associated proteins [BR:
mmma03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
107148250 (Smarca2)
Chromatin remodeling factors
BAF complex
107148250 (Smarca2)
PBAF complex
107148250 (Smarca2)
GBAF(ncBAF) complex
107148250 (Smarca2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
107148250
NCBI-ProteinID:
XP_015348370
Ensembl:
ENSMMMG00000002811
UniProt:
A0A8C5YUL6
LinkDB
All DBs
Position
Unknown
AA seq
1596 aa
AA seq
DB search
MSTPTDPAAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHPMPTM
GSSDFQQEGVHQLHKPIDGMHDKGIVEDIHCGSMKGTGMRPPHPGMGPPQSPMDQHSQGY
MSPHPSPLGAPEHVSSPISGGGPTPPQMPPSQPGPLIPGDPQAMNQPNRGPSPFSPVQLH
QLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGMQQQQQQQQQQQQQQQQQQQQQQAPQ
QQQQQQAPQQQQQQQQQQPTLVNYNRPSGPGPELLSGPSTPQKLPVPAPSGRPSPAPPTA
AQQPAAAVPGPSVPQPAPGQPSPILQLQQKQSRISPIQKPQGLDPVEILQEREYRLQARI
AHRIQELENLPGSLPPDLRTKATVELKALRLLNFQRQLRQEVVACMRRDTTLETALNSKA
YKRSKRQTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQ
KLSKAVATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQTD
EYVANLTNLVWEHKQAQAAKEKKKRRRKKKKAEENAEGGESALGPDGEPIDESSQMSDLP
VKVTHTETGKVLFGPEAPKASQLDAWLEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQ
ETEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEK
QSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNG
PYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYII
KDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWAL
LNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEV
ESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRK
ICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQ
MTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLN
LQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNV
DQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIARREEEFDLFM
RMDMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKIFGRGSRQRRDV
DYSDALTEKQWLRAIEDGNLEEMEEEVRLKKRKRRRNVEKDPAKEDVEKAKKRRGRPPAE
KLSPNPPKLTKQMNAIIDTVINYKDRCNVEKVPSNSQLEIEGNSSGRQLSEVFIQLPSRK
ELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIV
LQSVFKSARQKIAKEEESEEESNEEEEEEEEEESESEAKSVKVKIKLNKKEEKGRDKGKG
KKRPNRGKAKPVVSDFDSDEEQDEIEQSEASGTDDE
NT seq
4791 nt
NT seq
+upstream
nt +downstream
nt
atgtccacacccacagaccctgctgcgatgccccacccggggccctcgccagggcctggg
ccctctcctggaccaatcctcggacctagtccaggcccaggaccatccccgggttctgtc
cacagtatgatggggccaagtcctggaccccccagcgtctcacatcctatgccaaccatg
ggctcttctgacttccaacaggaaggcgtgcatcagctgcataagcccatcgatgggatg
catgacaagggcattgtggaagatatccattgtggatccatgaagggcaccggtatgcga
ccacctcacccaggaatgggtcccccccagagtccaatggatcaacacagccaaggttac
atgtcaccacacccgtctccattgggagccccagagcatgtctccagccctatatctgga
ggaggcccaacgccaccccagatgccaccgagccagccagggcccctcatcccgggcgat
ccacaggccatgaaccagcccaacagaggaccctcgcctttcagtcctgtccagctgcat
cagcttagagcacagattttggcttacaaaatgctggcccggggccagcccctccccgaa
acactgcagcttgcagtgcaggggaaaaggaccttgcctggcatgcagcaacaacaacag
cagcagcagcagcaacagcagcagcagcagcaacagcagcagcagcagcaggcaccacag
cagcaacagcagcagcaggcaccgcagcagcagcagcagcagcagcagcagcagccgacc
cttgttaactacaacagaccatctggcccggggcccgagctgctgagcggccccagtacc
ccgcagaagctgccggtgcctgcgcccagcggcaggccctcgcctgcgccccccacagcc
gcacagcagcctgcagcagcagtgccggggccctccgtgccacaaccagcccccgggcag
ccctcgcccatcctgcagctgcaacagaagcagagccgcatcagccctatccagaagcca
caaggcttggaccccgtggagatcctgcaggagcgggaatacagacttcaggctcgcata
gctcataggattcaagaactggaaaatctgcctggctctttgccacctgatttacgaacc
aaagcaaccgtggaactgaaagcacttcggttgctcaattttcaacgtcagctgagacag
gaggtggtggcctgcatgcgcagggacaccaccctggagacggctctcaactccaaagca
tacaaacggagcaagcgccagactctgcgagaagcccgcatgactgagaagctggagaag
cagcagaagatcgagcaggagaggaagcgccgacagaaacaccaggaatacctgaacagt
attttgcaacatgcaaaagattttaaggaataccatcgatctgtggctgggaagatccag
aagctttccaaagcagtggcaacttggcatgccaacactgaaagggagcagaagaaggag
acagagcggatcgaaaaggagagaatgcggagactgatggctgaagatgaagagggctat
aggaaactgattgatcaaaagaaagaccggcgcttagcttaccttttgcagcagacagat
gaatatgtggccaatctgaccaacctggtttgggagcataaacaagcacaagctgccaaa
gagaagaagaagaggaggaggaagaagaagaaggctgaagagaatgcagagggtggggag
tctgccctgggaccagatggagagccaatagatgagagcagtcagatgagtgacctgcct
gtcaaagtgactcacacagaaactggcaaagtcctctttggaccagaagcacccaaagca
agtcagctggacgcctggttggaaatgaatcctggttatgaagttgcccctagatctgac
agtgaagagagtgattctgactatgaggaggaggatgaagaagaagagtctagtaggcag
gaaacagaagagaaaatccttctggatccaaacagtgaagaagtttccgagaaagatgcg
aagcagatcattgagaccgcgaagcaagatgtggatgatgaatacagcatgcagtacagt
gccagggggtcccagtcctactacactgtggctcatgccatctcggaacgggtggagaag
cagtctgccctcctcatcaatgggaccctgaagcattaccagctccagggcctggaatgg
atggtttccctgtataataacaatttgaacggaatcttagctgatgaaatgggcctaggc
aagaccatacagaccattgcactcatcacttatctgatggagcacaaaagactcaatggc
ccctatctcatcattgttcccctttcgactctttctaactggacatatgaatttgacaaa
tgggctccttctgtggtgaaaatttcttacaagggtacccctgccatgcgccgctccctt
gtccctcagctacggagtggcaaattcaatgtccttttgactacttacgagtacattata
aaagacaagcacattcttgcaaagattcggtggaaatacatgatagtggacgaaggccac
agaatgaagaatcaccactgcaagctgactcaggtcctgaacactcactacgtggccccc
aggagaatcctcttgactgggaccccactgcagaataagcttcctgaactctgggccctc
ctgaacttcctcctccccacaattttcaagagctgcagcacattcgaacagtggtttaat
gctccatttgccatgactggtgaaagggtggatttaaatgaagaagaaactatattgatc
atcaggcgtctacataaggtgttgagaccatttttattgaggagactgaagaaagaagtt
gaatctcagcttccagaaaaagttgaatatgtgatcaagtgtgacatgtcagctctgcag
aagattctgtatcgccacatgcaagcgaaggggatcctcctcacagatggttctgagaaa
gataagaaggggaaaggaggtgcaaagacacttatgaacactatcatgcagttgagaaaa
atctgcaatcacccatatatgtttcagcacattgaggaatcctttgctgaacacctgggc
tattcaaatggggtcatcaatggggctgagctgtatcgggcctcaggaaagtttgagcta
cttgatcgtattctgcccaaattgagagcgactaatcaccgcgtgctgcttttctgccag
atgacgtccctcatgaccatcatggaggattactttgcttttcggaacttcctttacctg
cgtcttgatggcaccaccaagtctgaagatcgtgctgctttgctgaagaaattcaatgaa
cctgggtcccagtatttcattttcttgctgagcacacgcgctggaggcctgggcttaaat
cttcaggcagctgatacggtggtcatctttgacagcgactggaatcctcatcaggatctg
caagctcaagaccgagctcaccgcattggtcaacaaaatgaggtccgagtgctgagactt
tgtacggtgaacagtgtggaggagaagattcttgcagctgcaaaatacaaactgaatgtg
gatcagaaagttatccaggcgggcatgtttgatcaaaagtcttcgagccacgagcggagg
gcgttcctgcaggccatattggagcatgaagaagaaaatgaggaagaagatgaagtaccg
gacgatgagactctgaaccaaatgattgctcggcgagaagaagaatttgacctttttatg
cgtatggacatggaccggcggagggaagatgcccggaatccaaaacgcaagcctcgatta
atggaggaagacgagctgccctcctggattattaaggatgacgccgaagtagaaaggttg
acctgtgaagaagaggaggagaaaatatttggtagggggtctcgccagcgtcgtgacgtg
gactacagcgatgccctcacagagaagcagtggctcagggccatcgaagacggaaatttg
gaagaaatggaagaggaagtgcggcttaagaagagaaaaagacgaagaaacgtggaaaaa
gatccggcaaaggaagatgtagaaaaggctaagaagagaagaggccgccctccagctgag
aaactctccccaaacccccccaaactgacaaagcagatgaacgccatcattgatactgtg
ataaactacaaagacaggtgtaacgtggagaaggtgcccagtaattctcagttggaaata
gaaggaaacagttcagggcgacagctcagtgaagtcttcattcagttaccttccaggaaa
gagttaccagagtactatgaattaattaggaagccagtggatttcaaaaaaataaaggaa
agaattcgtaatcataagtaccggagcctgggagatctggagaaagatgtcatgcttctc
tgtcacaatgcccagaccttcaacttggagggatcacagatctatgaagattccatcgtc
ttacagtcagtgtttaagagcgctcggcagaaaattgccaaagaggaagagagtgaggaa
gaaagcaatgaggaggaggaagaggaagaggaggaagaatccgagtctgaggccaagtct
gttaaggtgaaaatcaagctcaataaaaaagaggagaaaggccgagacaaaggaaagggc
aagaaaaggccaaatcgaggaaaagccaaacctgtagtgagcgattttgacagcgacgaa
gagcaggatgaaattgagcagtcagaagcaagtgggaccgatgacgagtga
DBGET
integrated database retrieval system
