Marmota marmota marmota (Alpine marmot): 107148579
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Entry
107148579 CDS
T09644
Symbol
Col2a1
Name
(RefSeq) collagen alpha-1(II) chain isoform X3
KO
K19719
collagen type II alpha
Organism
mmma
Marmota marmota marmota (Alpine marmot)
Pathway
mmma04151
PI3K-Akt signaling pathway
mmma04510
Focal adhesion
mmma04512
ECM-receptor interaction
mmma04518
Integrin signaling
mmma04974
Protein digestion and absorption
mmma05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
mmma00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
107148579 (Col2a1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107148579 (Col2a1)
04518 Integrin signaling
107148579 (Col2a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107148579 (Col2a1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
107148579 (Col2a1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
107148579 (Col2a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
mmma00536
]
107148579 (Col2a1)
Glycosaminoglycan binding proteins [BR:
mmma00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107148579 (Col2a1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
107148579
NCBI-ProteinID:
XP_015348756
Ensembl:
ENSMMMG00000022770
UniProt:
A0A8C6EZ79
LinkDB
All DBs
Position
Unknown
AA seq
1487 aa
AA seq
DB search
MIRLGAPQTLVLLTLLVAAVLRCQGQDVQEAGSCLQDGQRYNDKDVWKPEPCRICVCDTG
TVLCDDIICEDVKDCLSPEIPFGECCPICPADLATTSGKPGPKGQKGEPGDIKDIVGPRG
PPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPSGLGGNFA
AQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMG
PRGPPGPPGKPGDDGEAGKPGKSGERGLPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKG
EAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVG
PAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKG
SAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQG
APGPAGEEGKRGARGEPGGAGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAG
PKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPG
VMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPG
PSGFQGLPGPPGPPGEGGKPGEQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGARG
LPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPG
KDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPG
ADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPG
AAGRVGPPGSNGNPGPPGPPGPSGKDGPKGVRGDIGPPGRAGDPGLQGPAGPPGEKGEPG
DDGPAGVDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPG
PVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAG
PTGKQGDRGEAGAQGPMGPSGPAGARGIPGPQGPRGDKGESGEPGERGLKGHRGFTGLQG
LPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAG
PPGNPGPPGPPGPPGPGIDMSAFAGLGQREKGPDPLQYMRADQAAGTLRQHDAEVDATLK
SLNNQIESIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETG
ETCVYPNPANVPKKNWWSSKSKDKKHIWFGETINGGFHFSYGDDNLAPNTASVQMTFLRL
LSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTALKDGCTK
HTGKWGKTVIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCFL
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgatccgcctcggggctccccagacgctggtactgctgacgctgctcgttgccgctgtc
cttcggtgtcagggccaggatgtccaggaggctggcagctgtttgcaggatgggcagagg
tataatgataaggatgtatggaagcctgagccctgccggatctgtgtctgtgacactggg
actgtcctctgcgatgacataatctgtgaagacgtgaaagactgcctcagccctgagatc
cccttcggagagtgctgccccatctgcccagctgacctcgccactaccagtggaaaacca
ggaccaaagggacagaaaggagaaccaggagacatcaaggatatcgtaggacccagagga
cctcctgggcctcagggacctgcaggagaacaaggacccagaggtgatcgtggtgacaaa
ggtgaaaaaggtgctcctggacctcgtggcagagatggagagcctggaacccctggtaat
cctggcccccctggtcctcctggccctcctggtccctctggcctcggtggaaacttcgct
gcccagatggctggaggatttgatgagaaggctggtggtgcccagatgggagtaatgcaa
ggaccaatgggccccatgggacctcgaggacctccaggtcctgctggtgctcctggtcct
caaggatttcaaggcaaccctggtgaacccggtgaacctggtgtctctggtcccatgggt
ccccgtggtcctcctggcccccctgggaaacctggtgatgatggagaagctggaaaacct
ggaaaatctggtgaaagaggtcttcctggccctcagggtgctcgaggcttcccaggaact
ccaggccttcctggtgtcaaaggtcacagaggttacccaggcctggatggtgctaaggga
gaagctggtgctccgggtgtaaagggtgagagtggttcccctggcgagaatggttctcca
ggtccaatgggtccccgcggcctgcctggtgagagaggacgaactggccctgctggtgct
gcaggtgcccggggcaatgatggccagccaggccccgctgggcctccgggtcccgttggt
cctgctggtggtcctggattccctggtgctcctggtgccaagggtgaggccggcccaacc
ggtgcccgtggtcctgaaggtgctcaaggccctcgaggtgaacctggtactcctgggtcc
cctgggcctgctggtgcttccggtaaccctggaactgacggcattcctggagccaaagga
tctgctggtgctcctgggattgctggtgctcctggcttccctggaccccgtggtcctcct
ggccctcaaggtgcaactggtcctcttggtccaaaaggtcagacgggtgagcctggtatt
gctggcttcaaaggtgaacaaggccccaagggagaacctggtcccgctggcccccaggga
gcccctggtcctgctggtgaagaaggcaaaagaggtgctcgtggagagcctggtggtgct
gggcccattggtccccccggagaaagaggtgctcctggaaaccgtggtttcccaggtcag
gatggtctagcaggtcccaagggagcccctggagagcgagggcccagtggccttgctggt
cccaagggagccaacggtgaccctggccgtcctggagaacctggtctccctggagctcgg
ggtcttactggtcgccctggtgatgctggtcctcaaggcaaagttggcccttcaggagcc
cctggtgaagatggccgtcctggacctccaggtcctcagggggcccgtggacagcctggt
gtcatgggtttccctggccccaaaggtgccaatggtgagcctggcaaagctggtgagaag
ggtctgcctggtgctcctggtctaagaggtcttcctggcaaagatggtgagacaggcgct
gcaggaccccctggccctgctggacctgctggtgaacgaggcgagcagggtgctcctggg
ccatctgggttccagggacttcctggccctcctggtcccccaggtgaaggtggaaaacca
ggagagcagggtgttcctggtgaagctggagcccccggccttgtgggtcccaggggtgaa
cgaggtttcccaggtgaacgtggctctcctggtgcccagggactccagggtgcccgtggc
ctccctggcactcctggcactgatggtcccaaaggtgcatctggcccagctggcccccct
ggggctcagggccctccaggtctacagggaatgcctggtgagaggggagcagctggtatt
gctgggcccaagggagacaggggtgatgttggtgagaaaggtcctgagggagcccctgga
aaggacggtggacgaggtctgactggtcccattggcccccctggcccggccggtgcaaat
ggtgagaagggagaagttggccctcctggccctgcaggaagtgctggtgctcgaggtgcc
ccgggtgaacgtggagagactgggccccctggacctgctggattcgctggacctccgggt
gctgatggccaaccaggtgccaagggtgagcaaggagaggctggacagaaaggcgatgct
ggtgcccctggtccccagggaccctctggagctcctgggcctcagggtcctactggagtg
actggtcctaaaggagcccgaggtgcccaaggtcccccgggagccactggattccctgga
gctgctggccgtgttggacccccaggctccaatggcaatcctggaccccctggtccccct
ggtccttctggaaaagatggtcccaaaggtgttcgaggagacattggtccacctggcaga
gctggtgatcctggcctccaaggtcctgcaggaccccctggcgagaagggagagcctggc
gatgatggtcctgctggtgtcgacggtcctccaggtccccagggtctggctggtcagagg
ggcatcgttggtctacctggacagcgtggtgagagaggattccctggcctgcctggccca
tcgggtgagcccggcaagcagggtgcgcctggtgcatctggagatcgaggtcctcctggt
cctgtggggcctcctggtctgactggtcctgcaggtgaacctggacgggagggaagccca
ggtgctgatggtccacctggcagagatggtgcagctggagtcaagggtgatcgtggtgag
actggtgccgtgggtgctcccggagcacctggaccccctggttctcctggcccagctggc
ccaactggcaagcagggagacagaggagaagctggtgcacaaggccccatgggaccttca
ggaccggctggagcccggggaatcccaggccctcaaggtccccgaggtgacaaaggagaa
tctggagagcctggcgagaggggattgaagggacaccgtggcttcactggtctgcaaggc
cttcccggtcctcctggtccttctggagaccaaggtgcttctggtcctgctggtccttct
ggccctagaggtccacctggccctgttggtccctctggcaaagatggtgctaatggaatc
cctggccccattgggcctcctggtccccgtggacgttcaggcgaaactggtcctgctggt
cctcctggaaatcctggaccccctggccctccaggtccccctggccctggcatcgacatg
tctgcctttgctggcctaggccagagagagaagggccctgaccccctgcagtacatgcgg
gctgaccaggcagctggaaccttaagacagcatgacgccgaggtggatgccacactcaag
tccctcaacaaccagattgagagcatccgcagccccgagggttcccgcaagaaccctgct
cgtacctgccgggacctgaaactctgccaccctgaatggaagagcggagactactggatt
gaccccaatcagggctgcaccttggacgccatgaaggttttctgcaacatggagacaggc
gaaacctgcgtctaccccaacccagcaaatgtacccaagaagaactggtggagcagcaag
agcaaggacaagaagcacatctggtttggagaaaccatcaatggtggcttccatttcagc
tatggagatgacaacctggctcccaacactgccagcgtccagatgaccttcctacgtctc
ctgtcaactgagggctcccagaacatcacctaccactgcaagaacagcatcgcctacctg
gacgaagcagctggcaacctcaagaaggccttgctcatccagggctccaatgatgtggag
atccgggctgagggcaacagcaggttcacgtacactgccctgaaggatggctgcacgaaa
cacaccggtaagtggggcaagactgtcatcgagtaccggtcacagaagacttcacgcctc
cccatcattgacattgcacccatggacataggagggcctgagcaagaatttggtgtggac
atagggcctgtctgcttcttgtaa
DBGET
integrated database retrieval system
