Marmota marmota marmota (Alpine marmot): 107149856
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Entry
107149856 CDS
T09644
Symbol
Taf5
Name
(RefSeq) LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
mmma
Marmota marmota marmota (Alpine marmot)
Pathway
mmma03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
mmma00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
107149856 (Taf5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmma03021
]
107149856 (Taf5)
03036 Chromosome and associated proteins [BR:
mmma03036
]
107149856 (Taf5)
Transcription machinery [BR:
mmma03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
107149856 (Taf5)
Coactivators
SAGA/TFTC/STAGA complex
107149856 (Taf5)
Chromosome and associated proteins [BR:
mmma03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
107149856 (Taf5)
STAGA complex
107149856 (Taf5)
TFTC complex
107149856 (Taf5)
SAGA complex
107149856 (Taf5)
SLIK complex
107149856 (Taf5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WDR55
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_EIPR1
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_SPT8
WD_LRWD1
Beta-prop_DCAF12
Beta-prop_Nup120_160
RAB3GAP2_N
CDK5RAP3
Beta-prop_RIG_1st
eIF2A
Cytochrom_D1
VPS8_N
ABM-like
PROPPIN
Motif
Other DBs
NCBI-GeneID:
107149856
NCBI-ProteinID:
XP_015350229
Ensembl:
ENSMMMG00000023414
LinkDB
All DBs
Position
Unknown
AA seq
781 aa
AA seq
DB search
MAALAEEQTEVAVKLEPEGPPTLLPPQAGDGAGEGSGGTPNNGPNGGGGNVAASSSAGGD
GGTPXXXEAGAPHDRQTLLAVLQFLRQSNLREAEEALRREARLLEEAVAGSGTPGEVDGA
GTEAASALLSRVTASVPGSTASDPPSTGASGATVVSGSASGSVAPGKVGNVAVEDQPDVS
AVLSAYNQQGDPTMYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHENE
AKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLLKR
HLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLAGEAKREANKSKVFFGLLKE
PEIEVPLDDEDEEGENEEGKPKKKKPKKDSIGSKSKKQDPNAPPQNRIPLPELKDSDKLD
KIMNMKETTKRVRLGPDCLPSICFYTFLNAYQGLTAVDVTDDSSLIAGGFADSTVRVWSV
TPKKLRSVKQASDLNLIDKESDDVLERIMDEKTASELKILYGHSGPVYGASFSPDRNYLL
SSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQP
LRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSP
NGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWD
AIKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPVVHLHFTRRNLVLAAGAYSP
Q
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgctggcggaggagcagacggaggtggcggtcaagctagagcctgagggaccg
ccaacgctgctacctccacaggcgggcgacggcgcaggcgagggtagcggcggcactccc
aacaacggccccaacggcggcggcgggaacgttgcggcatcgtcatcggctggcggggat
ggcgggaccccnnnnnnnnnagaggccggcgctccccacgaccgacagactctgctggcg
gtgttgcaattcctacggcagagtaacctccgcgaggccgaggaggcgctgcgccgtgag
gcccggctgctggaagaggcagtggcgggctccggaactccgggagaggtggacggtgcc
ggcactgaggcggcgagcgcgcttctcagccgggtcacggcctctgtccccggctctacg
gcctccgatcctcccagcactggtgcttcaggggccacagtcgtctcaggatcagcttca
ggttctgtggctccggggaaagttggaaatgtagctgtggaagaccagccagatgtcagt
gctgtcttgtcggcctacaaccaacaaggagaccccacaatgtatgaagaatactatagt
ggactgaaacacttcatcgaatgttctctggactgccatcgggcagaattatcccaactc
ttttatcctctatttgtacacatgtacttggagctagtctataatcaacatgagaatgaa
gcaaaatcattctttgagaagttccatggagatcaggaatgttattaccaggatgaccta
cgagtattatctagtcttaccaaaaaggaacacatgaaagggaatgaaaccatgttggat
tttcgaacaagtaaatttgttctgcgtatttcccgtgactcgtaccaactcttgaagagg
catcttcaggagaaacagaacaatcagatatggaacatagttcaggagcacctctacatt
gacatctttgatgggatgccgcgtagtaagcaacagatagatgcgatggtgggaagtttg
gcaggagaggctaaacgagaggcaaacaaatcaaaggtattttttggtttgttaaaagaa
ccagaaattgaggtacctttggatgatgaggatgaggaaggagaaaatgaagaaggaaaa
cctaaaaagaagaagcctaaaaaagatagtattggatccaaaagcaaaaaacaagatccc
aatgctccacctcaaaacagaatccctcttcccgaattgaaagattcagataagttggat
aagataatgaatatgaaagaaaccaccaaacgagtgcgccttgggccagactgcttaccc
tccatttgtttctatactttcctcaatgcttaccagggcctcactgcagtggatgtcact
gatgattctagtctgattgctggaggttttgcagattcaacagttagagtctggtctgtg
acacccaaaaagcttcgtagtgtcaaacaagcatcagatcttaacctcatagacaaagaa
tcagacgatgtcttagaaagaatcatggatgagaaaactgcaagtgagttgaagatttta
tatggtcacagtgggcctgtctatggagccagcttcagtccagataggaactacctgctt
tcctcttcagaggatggaactgttagattgtggagccttcaaacgtttacttgcttggtg
ggatataaaggacacaactatccagtatgggacacacagttttctccatatggatattat
tttgtatcagggggccacgaccgagtagctcggctctgggctacagaccattatcagcct
ttaaggatatttgctggtcatcttgctgatgtgaattgtaccagatttcatccaaattca
aattatgttgctacgggctcagcagacagaactgtgcggctctgggatgtcctgaatggt
aattgtgtaaggatcttcactggacacaagggaccaattcattccttgacattttctccc
aatgggagattcctggctacaggagcaacagatggcagagtactcctttgggatattgga
catggtttgatggttggagaattaaaaggccacaccgacacagtctgttcacttaggttt
agtagagatggtgaaattttggcatcaggttcaatggataatacagttcggttatgggat
gccatcaaagcatttgaagatttagagactgatgactttactacagccactgggcatata
aatttacctgagaattcacaggagttattattgggtacatatatgaccaaatcaacacca
gttgtacacctccattttactcgaagaaatttggttctagctgcaggagcttatagtccg
caataa
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integrated database retrieval system
