Marmota marmota marmota (Alpine marmot): 107149915
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Entry
107149915 CDS
T09644
Symbol
Trub1
Name
(RefSeq) pseudouridylate synthase TRUB1
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
mmma
Marmota marmota marmota (Alpine marmot)
Brite
KEGG Orthology (KO) [BR:
mmma00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mmma03016
]
107149915 (Trub1)
Enzymes [BR:
mmma01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
107149915 (Trub1)
Transfer RNA biogenesis [BR:
mmma03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
107149915 (Trub1)
Prokaryotic type
107149915 (Trub1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Pus10_C
Motif
Other DBs
NCBI-GeneID:
107149915
NCBI-ProteinID:
XP_015350318
Ensembl:
ENSMMMG00000004622
LinkDB
All DBs
Position
Unknown
AA seq
351 aa
AA seq
DB search
MAAAEAAVVSSSSLETDPAPETAESAETAATTAATTAATAAAMAVAAAARTGCEARVLKA
ALATKLLSLSGVFAVHKPKGPTSAELLNRLKEKLLAEAGMPSPEWTKRKKQTLKIGHGGT
LDSAARGVLVVGIGRGTKMLTSMLSGSKRYIAIGELGKATDTLDSTGKVTEEKPYDKITQ
EDIEGILQKFTGTIMQVPPLYSALKKDGQRLSTLMKRGEVVEAKPARPVTVYSISLQNFQ
PPFFTLDVECGGGFYIRSLVSDIGKELSSCANVLELTRTKQGPFTLEEHALPEDKWTIDD
VAQSLEHCSSLLPAELTLKKSKPEESNEQVLSCEYMTLNETKGKDDVNKTF
NT seq
1056 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgcagaggcggccgtggtgtcgtcttcgtctttagaaacagacccagcccct
gaaactgcagaaagtgccgaaacagccgcaacaacggcggcgaccacggcagcaacggct
gcagccatggcggttgcagccgcagctaggaccggatgcgaagccagggtcctcaaggcc
gctttggctactaagctgctgtcccttagcggcgtgttcgccgtgcacaagcccaaaggg
cccacttcagccgagctgctgaatcggttgaaggagaagctgctagcagaagctggaatg
ccctctccagaatggaccaagaggaaaaagcagactttgaaaattggacacggagggact
ctagacagcgcagctcgaggcgttttggtggttggaattggaaggggaacaaaaatgttg
accagtatgttgtcaggatccaagaggtacattgccattggagagctggggaaagccact
gacacactcgattctacagggaaagtgacagaagagaaaccctatgataaaataacacaa
gaagatattgaaggcatactacagaaatttactgggacaataatgcaagtaccccctctt
tattctgcattaaagaaagatggacagagactttcaactttaatgaagagaggtgaagta
gtagaagcaaaacctgccaggccagtaactgtatacagtatctcccttcaaaatttccag
ccaccatttttcacattagatgttgaatgtggaggaggtttttatatcagaagcttggtc
agtgacattggcaaagagctctcttcctgtgccaatgtactagagcttacccgaaccaaa
caggggccatttacactagaagaacatgccctccctgaggacaaatggacaattgatgac
gttgcacagtctcttgagcattgctcgtctcttctgccagcagagctgacacttaaaaaa
tcaaaacccgaagagtctaatgagcaggttttgagctgtgaatatatgactctaaatgag
acaaaggggaaagatgatgttaataagacattctga
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