Marmota marmota marmota (Alpine marmot): 107150973
Help
Entry
107150973 CDS
T09644
Symbol
Edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
mmma
Marmota marmota marmota (Alpine marmot)
Pathway
mmma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107150973 (Edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmma03019
]
107150973 (Edc4)
Messenger RNA biogenesis [BR:
mmma03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107150973 (Edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
107150973 (Edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EDC4L
Beta-prop_TEP1_2nd
WD40_CDC20-Fz
WD40_Prp19
DUF445
Beta-prop_HPS5
WDR55
EIF3I
Motif
Other DBs
NCBI-GeneID:
107150973
NCBI-ProteinID:
XP_015351672
Ensembl:
ENSMMMG00000014739
UniProt:
A0A8C5ZLM1
LinkDB
All DBs
Position
Unknown
AA seq
1406 aa
AA seq
DB search
MASCASIDIEDATQHLRDILKLDRPAGGPSAESQRSSSAYNGDLNGLLVPDPLCSGDGTS
TSKPGLRIIPPINLQEKQVICLSGDDSSTCIGILAKEVEIVASSDSSISSKARGSNKVKI
QPVAKYDWEQKYYYGNLIAVSNSFLAYAIRAANNGSAMVRVISVSTSERTLLKGFTGSVA
DLAFAHLNSPQLACLDEAGNLFVWRLALVNSKIQEEILVHIRQPEGTPLNHFRRIIWCPF
IPEESEDCCEESSPTVALLHEDRAEVWDLDMLRSNHSMWPVDVSQIKQGFIVVKGHSTCL
SEGALSPDGTVLATASHDGYVKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKKQ
DPEVPFWRFLITGADQNRELKMWCTVSWTCLQTIRFSPDIFSSVSVPPSLKVCLDLSAEY
LILSDVQRKVLYVMELLQNQEEGRACFSSISEFLLTHPVLSFGIQVVSRCRLRHTEVLPA
EEENDSLGAEGSHGAGTMESAAGVLIKLFCVHTKALQDVQIRFQPQLNPDVVAPLPTHTA
HEDFAFGESRPELGSEGLGSTTHGSQPDLRRIVELPAPADFLTLSSETKPKLMTPDAFMT
PTASLQQITASPSSSSSSSNSSSSSSSSSSSSSSLTAVSAVSSTSAVDPSLPRPPEELTL
SPKLQLDGSLTMSNSSSLQASPRSLLPSLLPGPGDKLTPKGPGQVSATASALSLELQEVE
PLGLPQASPSRTRSPDVISSASTALSQDIPEIASEALSRGFGSSASEGLEPDSMASAASA
LHLLSPRPRPGPELGPQLGLDGGPGDGDRHSTPSLLEAALTQEAAPADSQVWPTAPDITR
ETCSTLAESPRNGLQEKHKSLAFHRPPYHLLQQHDSQDTSAEQSDHDDEVASLAAASGGF
GTKIPTPRLPAKDWKTKGSPRTSPKIKRKSKKDDGDSAMGSRLTEHQVAEPPEDWPALIW
QQQRELVELRHSQEELLQRLCAQLEGLQNTVTGHVERALETRHEQEQRRLERALAEGQQR
GGQLQEQLTQQLSQALSSAVAGRLERSIRDEIKKTVPPCVSRSLEPVAGQLSNSVATKLT
AVEGSMKENISKLLKSKNLTDAIARAAADTLQGPMQAAYREAFQSVVLPAFEKSCQAMFQ
QINDSFRLGTQEYLQQLESHMKSRKAREQEAREPVLAQLRGLVSTLQTATEQMAATVSSS
VRAEVQHQLHVAVGSLQESILAQVQRIVKGEVSVALKEQQAAVTSSIMQAMRSAAGTPVP
SAHIDCQAQQAHILQLLQQGHLNQAFQQALTAADLNLVLYVCETVDPAQVFGQPPCPLSQ
PVLLSLIQQLASDLGTRTDLKLSYLEEAVMHLDHSDPITRDHMGSVMAQVRQKLFQFLQA
EPHNSLGKAARRLSLMLHGLVTPSLP
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
atggcctcttgcgcgagcatcgacatcgaggacgccacgcagcacctgcgggacatcctc
aagctggaccggcccgcgggaggccccagtgcagagagccagcggtcatctagtgcctat
aatggagacctcaatgggctcctggtaccagaccccctctgctcaggtgatggtacctca
acaagtaagcctggtctgcggatcataccacccattaacctgcaagagaaacaggtcatc
tgcctttctggagatgacagctccacctgcattgggattttggccaaggaggtagagatt
gtggccagcagtgactccagcatttcaagcaaggcacgggggagcaacaaggtgaaaatc
cagcctgttgccaagtacgactgggagcagaagtactactatggcaacctaattgctgtg
tccaactctttcttagcctatgccattcgtgctgccaacaatggctcagcaatggtgcga
gtgatcagtgtcagcacttcagagcggaccctacttaagggcttcacaggcagtgtggct
gatctggcctttgcacacctcaactctccacagctggcttgcctggatgaggcaggcaac
ctgtttgtgtggcgcttggctctggttaacagcaaaattcaagaagagatcttggtccat
atccggcagccagagggcacgccactgaaccacttccgaaggatcatctggtgccccttt
attcctgaggaaagtgaggactgctgtgaggagagtagcccaacagtggccctgctgcat
gaagaccgggctgaggtgtgggacctggacatgctccgctccaaccacagcatgtggcct
gttgatgtcagtcaaatcaagcagggattcattgtggtaaaaggccacagcacgtgtcta
agtgaaggagccctctctcctgacgggactgtcctagctactgcaagtcatgatggctat
gtcaagttctggcagatctacattgaggggcaggatgagccacggtgtctacatgagtgg
aagcctcatgatgggcggcccctctcctgcctcctattctgtgacaatcataagaaacag
gaccctgaggtcccattctggaggttcctcattactggtgctgaccagaatcgggagttg
aagatgtggtgcacagtgtcctggacctgcctacagaccattcgcttctccccagatatc
ttcagctcagtgagtgtgccccccagtctcaaagtttgcttagacctctcagcagaatac
ttaattctcagtgatgtacaacgaaaggtcctatatgtgatggagctgctgcagaaccag
gaggaaggccgtgcctgcttcagctccatttcagagttcctgcttacccaccctgtgctg
agctttggcatccaggttgtgagtcgttgccggctgcggcacactgaagtgctgcctgct
gaggaggaaaatgatagcctgggggctgagggttctcatggagctggtaccatggagtct
gcagctggcgtactcatcaagctcttttgtgtgcatactaaggccttgcaagatgtacag
atccgtttccagccacagctgaaccctgatgtggtggccccactccccactcacactgcc
catgaggactttgcctttggagagtctcggcctgaactgggctctgagggcctgggatca
accactcacggctcccagcctgacctccgacgcattgtggagctgcctgcacctgctgac
ttcctcaccctgagcagtgaaaccaaacccaagttgatgacacctgatgcctttatgaca
cccactgcctccttgcagcagatcactgcatcccccagcagcagcagcagcagcagcaat
agcagcagtagcagcagcagcagtagtagcagcagcagctctcttacagctgtgtctgct
gtgagtagcacctcagctgtggatccctccttgcccaggccacctgaagagttgaccttg
agccccaaattgcagctggatggcagtctgacaatgagcaatagcagcagcctgcaggca
agcccacgcagcctcttgcccagcctgctcccaggcccaggcgataaattgactcccaaa
gggcccgggcaggtatctgctactgcctctgcactgtccctggagttacaggaagtggag
cctttggggctaccccaggcctcccccagtcgtacccgctcccctgatgttatctcctca
gcttctactgccctgtcccaggatattcctgagatcgcatctgaggccctgtcacgtggc
tttggctcctcggcttctgagggccttgagccagacagtatggcctcagctgcctcagca
ctacacctactatccccacggccccggccaggacccgagcttggcccccaacttggcctg
gatggaggccctggggatggggatcgacatagtaccccctcactcctggaagcagccttg
actcaggaggctgcccctgctgacagtcaggtctggcctacggcacctgacattactcgg
gagacctgtagtaccctggcagagagccccagaaatggtctccaggaaaagcataaaagc
ttggccttccaccgaccaccttatcacctgctacagcaacatgatagccaggacaccagt
gctgaacaaagtgaccatgatgatgaggtagccagtcttgctgctgcctcaggaggcttt
ggcaccaaaattcccactccccgcctgcctgccaaggactggaagaccaagggatcccct
cggacctcacccaagatcaagagaaaaagcaagaaggatgatggggattcagccatggga
tcccggctcacagagcaccaggtggcagagcctcctgaagactggccagcactaatttgg
cagcagcagagagaattggtagagctgcgtcacagccaagaagagctgctgcagcgtctg
tgtgcccaactcgaaggcctgcagaacactgtcacaggccatgtagaacgtgcccttgag
acccggcatgagcaggaacaacggcgtctagagagggcactggctgaggggcagcagcgg
ggtgggcaactgcaggagcagctgacacaacagctgtcccaagcactatcttctgctgtg
gctgggcggttggaacgtagcatacgagatgagattaaaaaaacagttcctccatgtgtc
tccagaagtctagagcctgtagcaggccaactgagcaattcagtggctaccaagctcaca
gctgtagagggcagcatgaaagagaacatctctaagctacttaagtccaagaatttgaca
gatgctatcgcccgagcagctgcagacacattacaggggccaatgcaggctgcctaccgt
gaagccttccagagcgtggtgctgcctgcctttgaaaagagctgccaggccatgttccag
caaatcaatgatagcttccggctgggcacacaggaatacttgcaacagctagagagccac
atgaagagccggaaggcacgggaacaggaggccagagagcctgtgcttgcccagcttcgg
ggcctggtcagcacactgcagactgccactgagcaaatggcagccactgtatctagcagt
gttcgggctgaagtacaacaccagctgcatgtggctgtgggcagcctgcaggagtcaatt
ttagcacaggtacagcgcattgttaagggtgaggtgagtgtggctctcaaggaacagcag
gctgccgtcacctccagtatcatgcaggccatgcgttcagctgctggcacacctgtcccc
tctgcccacatcgactgccaggcccagcaagcccatattttgcagctcttgcagcagggc
cacctcaatcaggccttccagcaggcgctgacagctgctgacctgaacctggtgctgtat
gtgtgtgaaacggtggacccagcccaggtttttgggcaacctccttgcccactctcccag
cctgtgctcctttccctcatccagcagctggcatctgaccttggcactagaactgacctc
aaactcagctacctggaagaggctgtgatgcacctggaccacagtgatcccatcactcga
gaccacatgggctccgtcatggctcaagtgcgccagaagctatttcagtttctgcaggct
gagccacacaactcactgggcaaagcagcccggcgtcttagcctaatgctgcatggcctt
gttacccccagcctcccttag
DBGET
integrated database retrieval system
