Marmota marmota marmota (Alpine marmot): 107151300
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Entry
107151300 CDS
T09644
Symbol
Lig1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
mmma
Marmota marmota marmota (Alpine marmot)
Pathway
mmma03030
DNA replication
mmma03410
Base excision repair
mmma03420
Nucleotide excision repair
mmma03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mmma00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
107151300 (Lig1)
03410 Base excision repair
107151300 (Lig1)
03420 Nucleotide excision repair
107151300 (Lig1)
03430 Mismatch repair
107151300 (Lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mmma03032
]
107151300 (Lig1)
03400 DNA repair and recombination proteins [BR:
mmma03400
]
107151300 (Lig1)
Enzymes [BR:
mmma01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
107151300 (Lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
107151300 (Lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
107151300 (Lig1)
DNA replication proteins [BR:
mmma03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
107151300 (Lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
107151300 (Lig1)
DNA repair and recombination proteins [BR:
mmma03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
107151300 (Lig1)
NER (nucleotide excision repair)
Other NER factors
107151300 (Lig1)
MMR (mismatch excision repair)
Other MMR factors
107151300 (Lig1)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
DDR
PucR
DUF1685
Motif
Other DBs
NCBI-GeneID:
107151300
NCBI-ProteinID:
XP_015352106
Ensembl:
ENSMMMG00000012242
LinkDB
All DBs
Position
Unknown
AA seq
927 aa
AA seq
DB search
MQRSIRSFFYPTKEGKAKKPEKETTNSSRETEPPPKVALKERNGVLPESDSPVKRPGRKV
ARVLSSEGEEEDEALTPPSGQKPVQDSPQGSPPSPALSSGNSPSISNTSLADTSPSGIPK
RLTARKQLPKRSMQDVLEEQSEDMEREAKRRKADEGEVPGEADTPRESPTEAEVVKTKEE
AEGEHPSTPPDPPKPPKAETPAKTKGTAAPEAPKAVSRQEPQEEDQSKPPPRAPRTLSSF
FTPRKPAVKIEVKEEESSALGKDEAKGPLDPTSYNPAKNNYHPIEDACWKPGQKVPYLAV
ARTFEKIEEVSARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNRLGPPQQGLELGIGDS
VLLKAVAQATGRQLETVRAEVAEKGDVGLVAESSRSTQRLMLPPPPLTTSGVFAKFRDIA
RLAGSASMAKKMDIIKGLFVACRHSEARFIARSLSGRLRLGLAEQSVLAALAQAVSLTPP
GQEYPPAVVDAGKGRTAEARKTWLEEQCLILKQTFCEVPDLDRIVPVLLEHGLEHLPEHC
RLSPGVPLKPMLAHPTRGVSEVLKRFEEAAFTCEYKYDGQRAQIHLLEGGEVKIFSRNQE
DNTGKYPDIISRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDPSEIQ
VQVCLYAFDLIYLNGESLVREPLSRRRQLLREHFVETEGEFVFATSLDTKDVEQIAEFLE
QSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRA
GRYGGFLLAAYDEDSEELQAICKLGTGFSDEELEEQHQSLQALVLPTPRPYVRADGAVAP
DHWLDPSAVWEVKCADLSLSPIYPAARGLVDSEKGISLRFPRFIRVREDKQPEEATTSAQ
VASLYRKQSQIQNQHDTDSDSNPEDFY
NT seq
2784 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagtatcaggtcatttttctaccccacaaaagagggtaaagcaaagaaacct
gagaaagagacaaccaacagcagcagagagacggagccccctccaaaagtggcactgaag
gagcggaatggagtgctgcccgagagtgactcaccagtgaagaggccagggaggaaggtg
gcccgggtcctgagcagtgagggagaagaggaggatgaagccctcaccccacccagtggc
cagaagcctgtgcaagactccccccaaggctctcctcccagtcctgccctgtcttctggg
aatagcccctccatctccaacacctcccttgcagacacctccccatcggggatcccaaag
cgtctcacagctcggaagcagctcccgaaacggtcaatgcaagatgtcctggaagagcag
agtgaagacatggaaagagaagccaagaggaggaaggcagatgaaggtgaggtcccagga
gaagcagacaccccaagagaaagtcccacagaggctgaagtggtaaagacaaaggaagaa
gctgaaggcgagcaccccagcacaccccctgaccctccaaagccccctaaagcggagact
ccagcaaagacaaaaggcactgcggcacctgaggcacccaaggcagtcagccgacaggag
ccacaggaagaggaccagagcaagcctcctcccagagcccccaggacgctcagcagtttc
ttcaccccccggaagccggcggtcaaaatagaagtgaaagaagaggagtcgagtgctctg
ggaaaggacgaggccaagggacctctggatccgactagctataatcctgccaagaacaac
taccaccccattgaggacgcctgctggaaaccaggccagaaggtcccttatctggctgtg
gcccgcacattcgagaagattgaggaggtttctgctcggctccggatggtggagacgctg
agcaacttgctacgctccgtagtggccctgtcacctccagacctcctacctgtcctctat
ctcagtctcaaccgccttgggccaccccagcagggcctggagcttggcattggtgacagc
gtcctccttaaagcagtggcccaggccacaggtcggcagctggagactgtgcgggccgag
gtggccgagaagggcgatgtggggcttgtggctgagagcagccgcagcacccagaggctc
atgctgccgccaccaccccttaccacctccggggtcttcgccaagttccgcgacatcgcc
cggctggccggcagtgcttccatggccaagaagatggacatcatcaaaggcctctttgtg
gcctgccgccactcggaagcccggttcatcgccaggtccctgagtggacggttgcgcctt
ggactcgcagagcagtcagtgctggccgcccttgcccaggctgtgagcctcacaccccca
ggccaagaatatccccctgctgtggtggatgctgggaagggcaggacagcagaggccagg
aagacgtggctggaggagcaatgcctgattctgaagcagacgttctgtgaggtgcctgac
ctggatcgaattgtccctgtgctgctggaacatggcctggagcatctcccggagcactgc
aggctgagcccaggggttcccctgaaaccgatgttggcgcatcccactcggggcgtcagc
gaggtcctgaaacgctttgaggaggcagccttcacctgcgagtacaagtatgacgggcag
agggcacagattcaccttctggaaggcggggaggtgaagattttcagcaggaatcaagaa
gataacacgggaaagtaccccgacatcatcagccgcatccccaagattaaactcccatca
gtcacgtccttcatcctggacacggaagctgtggcttgggaccgagaaaagaagcaaatt
cagccattccaagtgctcaccactcgcaaacgcaaggaggtagacccctcggagatccag
gtgcaggtgtgtctgtacgcctttgacctcatctacctcaacggagagtccctggtccgt
gaacccttgtcacgacgccggcagctgctccgtgagcactttgtagagacagagggcgag
tttgtttttgccacctccctggacaccaaggacgttgagcagattgctgagttcttagag
cagtcggttaaagactcctgtgaggggttgatggtgaagaccctggatgtcgatgccacc
tacgagattgccaaaaggtcacacaactggctcaagctgaagaaggactatctggatggc
gtgggtgacaccctggacctcgtggtgatcggcgcctacctgggccgggggaagcgggct
ggccggtacgggggcttcctgctggccgcctatgatgaggacagtgaggagctgcaagcc
atatgcaagcttggaaccggcttcagcgatgaggagctggaagagcagcatcagagcctg
caggccctggtgctgcccaccccacgtccctacgtgcgggctgatggtgctgtggccccc
gaccactggctcgatcccagcgctgtgtgggaagtgaagtgtgcggacctctccctctcc
cccatctaccccgctgcccggggcctggtggacagcgagaagggcatctcccttcgcttc
cctcggtttattcgtgtccgtgaagacaagcagccagaggaagccaccaccagtgcccag
gtggcctctctgtaccggaagcaaagtcagattcagaatcaacatgacacagactcagac
tccaaccctgaagatttctactaa
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integrated database retrieval system
