Marmota marmota marmota (Alpine marmot): 107151337
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Entry
107151337 CDS
T09644
Symbol
Sympk
Name
(RefSeq) symplekin isoform X1
KO
K06100
symplekin
Organism
mmma
Marmota marmota marmota (Alpine marmot)
Pathway
mmma03015
mRNA surveillance pathway
mmma04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
mmma00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107151337 (Sympk)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
107151337 (Sympk)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmma03021
]
107151337 (Sympk)
03019 Messenger RNA biogenesis [BR:
mmma03019
]
107151337 (Sympk)
Transcription machinery [BR:
mmma03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107151337 (Sympk)
Messenger RNA biogenesis [BR:
mmma03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
107151337 (Sympk)
U7-dependent histone pre-mRNA processing factors
107151337 (Sympk)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SYMPK_PTA1_N
Symplekin_C
PDS5
Cnd1
Cohesin_HEAT
INTS7_N
Motif
Other DBs
NCBI-GeneID:
107151337
NCBI-ProteinID:
XP_015352161
Ensembl:
ENSMMMG00000013938
LinkDB
All DBs
Position
Unknown
AA seq
1064 aa
AA seq
DB search
MASGSGDSVTRRSVASQFFTQEEGPAIDGMTTSERVVDLLNQAALITNDSKITVLKQVQE
LIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRD
ENVNVVKKAILTMTQLYKVALQWMVKSRVISDLQEACWDMVSAMAGDIILLLDSDNDGIR
THAIKFVEGLIVTLSPRVADSEVPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLL
KFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQAYETLHANLPPTLAKSQVSSVRKN
LKLHLLSVLKHPASLEFQAQITTLLVDLGTPQAEIARNMPSSKDARKRPRDDSDSTLKKM
KLEPNLGEDDEDKDLEPGPSGTSKASAQISGQSDTDITAEFLQPLLTPDNVANLVLISMV
YLPETMPASFQAIYTPVESAGTEAQIKHLARLMATQMTAAGLGPGVEQTKQCKEEPKEEK
VVKPESVLIKRRLSAQGQAISVVGSLSSMSPLEEEVPQAKRRPEPIIPVTQPRLAGAGGR
KKIFRLSDVLKPLTDAQVEAMKLGAVKRILRAEKAVACSGAAQVRIKILASLVTQFDSGL
KAEVLSFILEDVRARLDLAFAWLYQEYNAYLAAGPSGTLDKYEDCLIRLLSGLQEKPDQK
DGIFTKVVLEAPLITESALEVIRKYCEDESRTYLGMSTLRDLIFKRPSRQFQYLHVLLDL
SSHEKDKVRSQALLFIKRMYEKEQLREYVEKFALNYLQLLVHPNPPSVLFGADKDTEVAA
PWTEETVKQCLYLYLALLPQNHKLIHELAAVYTEAIADIKRTVLRVIEQPIRGMGMNSPE
LLLLVENCPKGAETLVTRCLHSLTDKVPPSPELVKRVRDLYHKRLPDVRFLIPVLNGLEK
KEVIQALPKLIKLNPIVVKEVFNRLLGTQHGEGNSALSPLNPGELLIALHNIDSVKCDMK
SIIKATNLCFAERNVYTSEVLAVVMQQLMEQSPLPMLLMRTVIQSLTMYPRLGGFVMNIL
SRLIMKQVTCPWPSSSGPQEQTAEVVLRRDWRPPEPSSPQGEPG
NT seq
3195 nt
NT seq
+upstream
nt +downstream
nt
atggcaagtggcagtggggacagtgtcacccgccggagcgtggcatcacagtttttcaca
caagaggagggaccagccattgatggcatgaccacctcagagagggtggtggatctcctg
aaccaggcagcgctgatcaccaacgactcaaagatcacagtgctcaagcaggtccaggag
ctgatcatcaacaaagaccccacactgctggacaacttcctggatgagatcatcgctttc
caagcagacaagtcgattgaagtgcgaaaatttgtcattggcttcatcgaggaggcatgc
aaacgagacattgagttattgctgaaactgattgcaaacctcaacatgctcttgagggac
gagaatgtgaatgtggtgaagaaggccatcctcaccatgacccagctctacaaagtagcc
ctgcagtggatggtgaagtcacgggtcatcagtgatctccaggaagcctgttgggacatg
gtgtctgccatggctggggacatcatcttactgttagactctgacaatgatggaatacga
acccacgccatcaaatttgtagagggcctcattgtcaccctgtcaccccgagtggctgac
tcagaggtaccccgacgccaggagcatgacatcagcctggaccgcatccctcgagaccac
ccctacatccagtacaatgtgctgtgggaagagggcaaggcagccttggagcagctgctc
aagttcatggtgcaccccgccatctcctccatcaacctgaccacagcactgggctccctt
gccaatatcgcccgtcaaagacccatgttcatgtctgaggtgatccaggcctatgaaacc
ctgcatgccaacctcccgccaacgctggccaaatcgcaggtgagcagtgtacgcaagaac
ctcaagttgcacctgttgagtgtgctcaagcacccagcctccttggagttccaggcccaa
atcaccaccctgttggtggacctgggcacacctcaggctgagattgcccgcaatatgccc
agcagcaaggatgcccgcaagcggccccgagatgactcagattccacactcaagaagatg
aagttggagcccaacctgggggaagatgatgaagacaaggacttggagcctggtccatca
gggacttcaaaggcctccgcccagatctcaggccagtcagacacagacatcacagctgag
ttcctgcagcctctgctgacgcctgacaatgtggccaatctggtcctcatcagcatggtg
tatttgcctgagaccatgcctgcctccttccaagccatctacactcctgtggagtcagca
ggaactgaagcccagatcaagcacttggctaggctcatggccacacagatgacggctgca
ggactgggtccaggtgtggagcagaccaaacagtgtaaggaggaacccaaggaagagaag
gtggtgaagccggagagtgtccttatcaagaggcgtctgtcagcccagggccaagccatc
tctgtggtgggctctctgagctccatgtccccattggaagaggaggtgccccaggccaag
aggaggccagagcccatcatccctgttacacagccccggctggcaggtgccggtgggcgc
aagaagatcttccgtttgagtgacgtgctgaagcccctgacagatgcccaggttgaagcc
atgaagctgggtgctgtgaagcggatcctgcgtgctgagaaggctgtggcctgcagcggg
gcagcacaggtgcgcatcaagatcctagccagcctggtgacacagtttgactcaggtctg
aaggctgaggtcctgtccttcatcctggaggatgttcgggcccggctggacctggccttt
gcctggctctaccaggagtacaatgcttacctggcagcgggtccctcaggcaccctggac
aagtacgaggactgcctcatccgtctgctctctggcctgcaggagaaaccagaccagaaa
gatgggatcttcaccaaggtggtgctggaggcaccactcatcaccgagagtgccctggag
gtgattcgcaagtactgtgaagacgagagccgcacctatctgggcatgtccacccttcga
gacctgatcttcaagcgcccatcccgccagtttcagtacctgcatgtcctcctggacctc
agttcccacgagaaggacaaggtgcgttcccaggccctgctgttcatcaagcgcatgtac
gagaaggagcagctgcgggagtatgtggagaagtttgccctcaactacctgcagctcttg
gtccaccccaacccaccctctgtgctgtttggagctgacaaggacacagaggtggctgcg
ccctggaccgaggagacagtgaagcaatgtctgtacctctacctggccctcctgccccag
aaccacaagctgatccacgagctggccgctgtgtacaccgaggccatcgccgacatcaag
cggaccgtgctgagggtcattgagcagccgattcgaggaatgggcatgaactcaccagag
ctgctcctgctggtggaaaactgccccaagggggcagagacactagtcacgcgatgtctg
cacagcctcacagataaagtgccaccctccccagagctggtgaagcgggtccgggacctc
taccacaagcggctgcccgatgtccgcttcctcatcccagtgcttaatgggctggagaag
aaggaggtgatccaggctctgcccaagctcatcaaactcaaccccatcgtggtgaaagaa
gtcttcaaccgcctgctgggcacccagcacggtgaagggaactctgccttgtcccccctg
aaccctggagagctcctgattgcattacacaacatcgactcggtgaagtgcgacatgaaa
tccatcatcaaagccaccaacctgtgctttgcggagcggaacgtatacacgtcggaggtg
ctggccgtggtgatgcagcagctgatggagcagagccccctgcccatgctgctcatgagg
accgtcatccagtccctgaccatgtacccccgcctggggggcttcgtcatgaacatcctc
tcccgcctcatcatgaagcaggtaacctgcccttggccatccagctctggcccccaggaa
cagactgcagaggtggtgctgaggagagactggagaccacctgagccctcctccccccaa
ggggagcctggctga
DBGET
integrated database retrieval system
