Marmota marmota marmota (Alpine marmot): 107153286
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Entry
107153286 CDS
T09644
Symbol
Pcdh1
Name
(RefSeq) protocadherin-1 isoform X1
KO
K16498
protocadherin delta 1
Organism
mmma
Marmota marmota marmota (Alpine marmot)
Pathway
mmma03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
mmma00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
107153286 (Pcdh1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
mmma01009
]
107153286 (Pcdh1)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
mmma04515
]
107153286 (Pcdh1)
Protein phosphatases and associated proteins [BR:
mmma01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
107153286 (Pcdh1)
Cell adhesion molecules [BR:
mmma04515
]
Cadherins
Protocadherins
107153286 (Pcdh1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
107153286
NCBI-ProteinID:
XP_015354329
LinkDB
All DBs
Position
Unknown
AA seq
1215 aa
AA seq
DB search
MGSLRPSPGPGGQRLLLPPLLLALLLLLAPSTGHATRVVYKVPEEQPPNTLIGSLAADYG
FPDVGHLYKLEVGAPYLRVDGKTGDIFTTETSIDREGLRECQNQLPGEPCILEFEVSITD
LVQNGSPRLLEGQIEVQDINDNTPNFASPVITLAIPENTNIGSLFPIPLASDRDAGPNGV
ASYELQAGPEAQELFGLQVAEDQEEKQPQLIVMGNLDRERWDSYDLTIKVQDGGSPPRAS
SALLRVTVLDTNDNAPKFERPSYEAELSENSPIGHSVIQVKANDSDQGANAEIDYTFHQA
PEVVRRLLRLDRNTGLITVQGPVDREDLSTLRFSVLAKDRGANPKSARAQVVVTVKDMND
NAPTIEIRGIGLVTHQDGMANISEDVAEETAVALVQVSDRDEGENAAVTCVVAGDVPFQL
RQASETGSDSKKKYFLQTTTPLDYEKVKDYTIEIVAVDSGNPPLSSTNSLKVQVVDVNDN
APVFTQSITEVAFPENNKPGEVVAEVTASDADSGSNAELVYSLEPEPAAQGLFTISPENG
EIRVKTSLDREQRDSYELKVVAADRGSPSLQGTATVLVNVLDCNDNDPKFMLSGYNFSVM
ENMPALSPVGMVTVIDGDKGENARVQLSVEQDNGDFVIQNGTGTILSSLSFDREQQSTYT
FQLKAVDGGVPPRSAYVGVTINVLDENDNAPFITAPSNTSHRLLTPQTRLGETVSQVTAE
DIDSGVNAELTYSIAGGNPYGLFQIGPNSGAITLEKEIERRHHGLHRLVVKVSDRGKPPR
YGTALVHLYVNETLANRTLLETLLGHSLDTPLDIDIAGDPEYERSKQRGNILFGVVAGVV
AVALLIALAVLVRYCRQREAKSGYQAGKKETKDLYAPKPSGKASKGNKSKGKKSKSPKPV
KPVEDEDEAGLQKSLKFNLMSDAPGDSPRIHLPLNYPPGSPDLGRHYRSNSPLPSIQLQP
QSPSASKKHQVVQDLPPANTFVGTGDTTSTGSEQYSDYSYRTNPPKYPSKQLPHRRVTFS
ATSQAQELQDPSQHSYYDSGLEESETPSSKSSSGPRLGPLALPEDHYERTTPDGSIGEME
HPENDLRPLPDVAMTGTCTRECSEFGHSDTCWMPGQSSPSRRTKSSALKLSTFVPYQDRG
GQEPAGAGSPSPPEDRNTKTAPVRLLPSYSAFSHSSHDSCKDSATLEEIPLTQTSDFPPA
ATPASAQTAKREIYL
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atggggtccctgaggcccagcccgggccctggggggcagcgattgctgctgccccccttg
ctgctggcactgctgctcctattggctccatccacaggccacgccactcgggtagtatac
aaggtaccagaggaacagccacccaacactctcattgggagcctcgcagccgactatggc
tttccagatgtgggccacctgtacaaactagaggtaggtgccccataccttcgagtggat
ggcaagacaggtgatattttcaccactgagacctccattgaccgtgaggggctccgtgaa
tgccagaaccagctccctggtgagccctgcatcctggagtttgaggtgtctatcacagac
ctcgtgcagaacggcagtccccggctgctagagggccagatagaggtacaggacatcaat
gacaacacacccaacttcgcctcaccagtcatcactctggccatccctgagaataccaac
atcggttcgctcttccctattccactggcttcagaccgtgatgctggccccaatggcgtg
gcatcctatgagcttcaggctgggcctgaggcccaggagctgtttgggctgcaggtggcc
gaggaccaggaggagaagcagccacagctcatcgtgatgggcaacctggaccgcgaacgc
tgggattcctacgacctcaccattaaggttcaggatggtggcagtcccccgcgtgccagc
agtgccctgctgcgtgtcactgtgcttgacaccaatgacaacgctcccaagttcgagcgg
ccctcctatgaggccgagctgtctgagaatagtcccattggccactcggtcattcaggtg
aaagctaatgattcagatcaaggcgctaatgcagagatcgactacacgttccaccaggca
cctgaagttgtgaggcgacttctgcgactggacagaaacactggactcatcactgttcag
ggccctgtggaccgtgaggacctgagcactctgcgcttctctgtacttgccaaggaccga
ggcgccaaccccaagagtgcccgtgcccaagtggttgtgactgtgaaggacatgaatgac
aatgctcccaccattgagatccgaggcataggactggtgacccatcaagatgggatggct
aacatctcagaggatgtggcggaggagacagccgtggctctggtacaggtatctgaccga
gatgagggagagaatgcagctgtcacctgtgtggtagcaggtgacgtgcccttccaactt
cgccaagccagtgagacgggcagtgatagcaagaagaagtacttcctgcagaccaccacc
ccacttgattacgagaaggtcaaagactacaccattgaaattgttgctgtggactctggc
aacccccctctctctagcactaactccctcaaggtgcaggtggtggatgtcaatgacaat
gcccctgtcttcacccagagcatcacggaggtggcctttccagaaaacaacaagcctggt
gaagtggtggctgaggtcactgccagcgatgctgactccggctctaatgcagagctggtt
tactctctggagcctgagccggctgcccagggcctcttcaccatctcacctgagaatgga
gaaatccgggtgaagacgtcccttgatcgggaacagagagacagctatgagttgaaagta
gtggcagctgaccggggcagccccagcctccagggcacagccaccgtcctcgtcaatgtg
ctggactgcaatgataatgaccccaaatttatgctgagtggctacaacttctcagtgatg
gagaacatgccagcgctgagtccagtgggcatggtgactgtcatcgatggggacaagggg
gagaatgcccgggtgcagctctcagtggagcaagacaatggtgactttgttatccagaac
ggcacaggcaccatcctgtccagcctgagcttcgaccgagagcagcagagcacctacacc
ttccagctgaaggcggtggacggcggcgtcccacctcgctcagcttacgttggcgtcacc
atcaatgtactagatgagaacgacaacgcaccctttattactgccccctccaacacttcc
caccggctgctcaccccgcagacacgtcttggtgagactgtcagccaggtgacagccgag
gacattgactctggtgtcaacgctgagctgacctacagcattgctggtggcaatccttat
ggactcttccagatcgggccaaattcaggtgccatcaccctggagaaggagattgagcgg
cgccaccacgggctgcaccgccttgtggtgaaggtcagtgaccgtggcaagcctccacgc
tacggcacagccttggtccatctttatgtcaatgagaccttagccaaccgcacactgctg
gagactctactgggtcacagcctggacacaccactggatatcgacattgctggggaccca
gaatatgagcgctccaagcagcgtggcaatatcctctttggtgtggtggctggtgtcgtg
gctgtggccttgctcatagccctggcagtgcttgtgcgctactgccggcagcgggaggcc
aagagtggctatcaggctggtaagaaagagaccaaggacctgtatgcccccaagcccagt
ggcaaagcctccaagggaaacaagagcaagggcaagaagagcaagtccccgaagcctgtg
aagccagtggaggacgaagatgaggccggattgcagaagtcactcaagttcaacttgatg
agtgacgcccctggggacagtccccgcatccacctgcccctcaactacccaccaggtagc
cctgacctgggccgccactaccgttctaactccccactgccttccatccagctgcagccc
cagtcaccctcggcctccaagaagcaccaagtggtgcaggacctgccgcctgcaaacaca
tttgtgggcaccggggacaccacgtccacgggctctgagcagtactccgactacagctac
cgcaccaacccccccaaataccccagcaagcagttacctcaccgtcgtgtcaccttctcg
gccaccagccaggctcaggagctgcaggacccatcccagcacagttactatgatagtggc
ctggaggaatctgaaacaccatccagcaagtcatcctcggggccccgactcggtcccctg
gcactgcctgaggatcactatgaacgcaccacccccgatggcagcataggagagatggag
caccctgagaatgacctccgccctctgcctgatgttgccatgacgggcacgtgtacccgg
gagtgcagcgagtttggccactctgacacatgctggatgcctggccagtcatctcccagc
cgccggaccaagagcagcgccctcaaactctccaccttcgtgccttaccaggaccgagga
gggcaggagcctgcgggcgccggcagccccagccccccggaagaccggaacaccaaaacg
gcccccgtgcgcctcctgccctcctacagtgccttctcccacagtagccatgattcctgc
aaggactcggccaccttggaggaaatccccctgacccagacctcggacttcccacccgca
gccacaccggcatctgcccagacggccaagcgcgagatctacctgtga
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