Marmota marmota marmota (Alpine marmot): 107155311
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Entry
107155311 CDS
T09644
Symbol
Lig3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
mmma
Marmota marmota marmota (Alpine marmot)
Pathway
mmma03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
mmma00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
107155311 (Lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mmma03400
]
107155311 (Lig3)
Enzymes [BR:
mmma01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
107155311 (Lig3)
DNA repair and recombination proteins [BR:
mmma03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
107155311 (Lig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
Synaptonemal_3
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
107155311
NCBI-ProteinID:
XP_015356685
Ensembl:
ENSMMMG00000013596
LinkDB
All DBs
Position
Unknown
AA seq
1055 aa
AA seq
DB search
MQFFVNLTKLTDVLAPKTYIVKYTYFVCIFREFRTPPLPSARPWILCNFPNHPSSYMTLA
FKILFPKSLCGLGRRELCLFREQYHWPDIRKFSQCLETDLLRGRCLLQRRKPVLSFQGAH
LRPRATCLVFLPESHVGLCSSPCEMAEQRFCVDYAKRSTAGCKKCKEKIVKGVCRIGKVV
PNPFSESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEELEDNEKEQITQHIAD
LSSKAAGTPKKKAVVQAKLTTTGQVASPGKGASLVTNTNPRKFSGFSAKPNNSNQAPSSP
TRKTSLSSSKCDPKHKDCLLREFRKLCAMVADNPSYNTKTQIIQDFLRKGSAGDGFRGDV
YLTVKLLLPGVIKSVYNLNDKQIVKLFSRIFNCNPDDMARDLEQGDVSETIRVFFEQSKS
FPPAAKSLLTIQEVDEFLLRLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKHDLKMN
SGAKHVLDALDPNAYEAFKASRNLQDVVERVLRNEQEVEKDPGQRRALSVQASLMTPVQP
MLAEACKSIEYAMKKCPNGMFSEIKYDGERVQVHKNGDYFSYFSRSLKPVLPHKVAHFKD
YIPKAFPGGHSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYFNDV
SLMDRPLCERRKFLHDNMVEIPNRIMFSEMKQVTKASDLADMINRVIREGLEGLVLKDVK
GTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPSSQKW
CTVTKCAGGHDDATLARLQKELDMVKISKDPSKIPSWLKINKIYYPDFIVPDPKKAAVWE
ITGAEFSKSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKEKADFTVVAG
DEGSSTTGGSNGENEGTSGSAASRKVPRASPNKPFPSAWKAEGKLRIPNSKGNKPTTKSS
VKVGEKRKATDEMPYQAKVLLDIFTGVRLHLPPSTPDFSRLRRYFVAFDGDLVQEFDIAS
ATHVLGSRDKNPEAQLVSPEWIWACIRKRRLVAPC
NT seq
3168 nt
NT seq
+upstream
nt +downstream
nt
atgcagttctttgtgaatctcacgaaacttactgatgttctcgctccaaaaacgtacatt
gtcaaatatacatattttgtatgcattttcagagagttcagaactccaccattaccatca
gcccgtccatggattctttgtaatttccccaaccacccttcgagctatatgactttggcc
tttaagatcctcttcccaaaaagcttgtgtggacttggccgaagagaactgtgcctgttc
cgagaacaatatcactggcctgacataaggaaattcagccagtgcttggaaacagatctg
ctacgtgggcgttgcctcctccagcgaagaaagcctgttctgtcattccagggagcccat
ctaagaccacgtgccacctgccttgttttcttgccagagtcgcatgtgggactctgcagt
agcccctgtgagatggccgaacaacggttctgtgtggactacgccaagcgcagcacagcc
ggctgcaaaaaatgcaaggagaagattgtgaagggcgtgtgccgcataggcaaggtggtg
cccaatcccttctccgagtctgggggtgacatgaaagaatggtaccacattaagtgcatg
tttgagaagctggagcgggctcgggccaccacaaaaaaaattgaagacctcacagagctg
gaaggctgggaagagctggaagacaacgagaaggaacagatcacccagcacattgcagat
ctgtcttctaaggcagcaggcacaccaaagaagaaagctgttgtgcaagctaagttgaca
acaactggccaggtggcatccccagggaaaggagcgtcacttgtcaccaacaccaatccc
cgaaagttttctggcttttcagccaagcccaacaactctaatcaagccccctcaagcccc
acccgcaagacaagtctgtcctcaagcaaatgtgaccccaagcacaaggattgtctgcta
cgggagttcaggaagctgtgtgccatggtggctgataatcctagctacaacacgaagacc
cagatcatccaggacttcttgcggaaaggctcagcaggagatggtttccggggtgatgtg
tacctaacagtgaagctgctgctgccgggtgtcattaagagtgtttacaacttgaatgat
aagcagattgtgaagcttttcagccgcatttttaactgtaacccagatgatatggcacgg
gacctggagcagggtgacgtgtcagagacgatcagagtcttctttgagcagagcaagtct
ttccctccagctgccaagagcctcctcaccatccaggaagtggatgaattcctccttcgg
ctctcgaagctcaccaaggaggatgagcagcagcaggccctgcaggacatcgcctccagg
tgtacggccaatgaccttaagtgcatcatcaggttgatcaaacatgatctgaagatgaac
tcaggtgcaaaacatgtgttagatgccctcgaccccaatgcctatgaagccttcaaagct
tcacgaaacttgcaggacgtagtggagcgggtccttcgcaatgagcaggaggtggagaag
gatccaggacagagacgggctctgagtgtccaggcctcgctgatgacgcctgtgcagccc
atgctggccgaggcctgcaagtccatcgagtatgcaatgaagaagtgtcccaacggcatg
ttctctgagatcaagtatgatggcgagcgagtccaggtgcataagaatggggactacttc
agctactttagccgcagtctcaagcccgtcctgcctcacaaggtggcccactttaaggac
tacatccccaaggcttttcctggaggccacagcatgattttggactctgaggtgctcctg
attgacaacaagacaggcaaaccactgccctttgggaccctaggagtgcacaagaaagct
gctttccaagatgctaatgtctgcctgtttgtttttgattgtatctactttaatgatgtc
agcttgatggacaggcctctgtgtgagcggcggaagtttcttcatgacaacatggttgaa
attcccaaccggatcatgttctcagaaatgaagcaagtcacaaaagcttcagacttggct
gacatgataaaccgggtgatccgggagggcttggaagggctggtgctgaaggatgtgaag
ggtacatatgagcctggaaagcggcactggctgaaagtgaagaaagactatttgaatgag
ggggccatggctgatacagctgacctggtggttcttggggccttctatggacaaggaagc
aaaggtggcatgatgtcaatcttcctcatgggctgctatgaccctagcagccagaagtgg
tgcacagtcaccaagtgtgcaggaggccatgacgacgcaacccttgcccgcctacagaag
gaactggacatggtgaagatcagcaaggatcccagcaaaataccctcctggctgaagata
aacaagatctactatcctgacttcatcgttccagacccaaagaaagctgctgtatgggag
atcacaggggcagaattctccaaatctgaggctcacaccgctgatgggatatccatccga
ttcccccgctgcacccgaatccgagatgacaaggactggaaatctgccactaacctcccc
caactcaaggaactgtatcagctgtccaaggagaaggccgacttcactgtggtggctgga
gatgagggaagctccactacaggaggcagcaatggcgagaacgagggcacttctgggtct
gctgcatcccgcaaggtccccagagcctcccccaacaaaccctttcccagtgcctggaag
gctgaagggaagctgaggatccccaacagcaaaggcaataagcctaccacaaagtcttca
gtgaaagttggagagaagaggaaagctactgatgagatgccataccaagcaaaggtgctg
ctggacatcttcactggggtgcggctccacttgccaccctccaccccagacttcagccgt
ctcagacgctactttgtggcatttgatggggacctagtgcaggaatttgacattgcctca
gccacacatgtgctgggtagcagggacaagaaccctgaggcccagctggtctccccagag
tggatttgggcatgtatacgaaaacggaggctggtagctccctgctag
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