Marmota marmota marmota (Alpine marmot): 107156219
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Entry
107156219 CDS
T09644
Name
(RefSeq) nuclear RNA export factor 2-like
KO
K14284
nuclear RNA export factor
Organism
mmma
Marmota marmota marmota (Alpine marmot)
Pathway
mmma03008
Ribosome biogenesis in eukaryotes
mmma03013
Nucleocytoplasmic transport
mmma03015
mRNA surveillance pathway
mmma05014
Amyotrophic lateral sclerosis
mmma05164
Influenza A
mmma05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
mmma00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107156219
03015 mRNA surveillance pathway
107156219
03008 Ribosome biogenesis in eukaryotes
107156219
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
107156219
05168 Herpes simplex virus 1 infection
107156219
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
107156219
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmma03019
]
107156219
03009 Ribosome biogenesis [BR:
mmma03009
]
107156219
Messenger RNA biogenesis [BR:
mmma03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
107156219
mRNA cycle factors
Stress granule specific factors
107156219
Ribosome biogenesis [BR:
mmma03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
107156219
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
LRR_8
LRR_4
Motif
Other DBs
NCBI-GeneID:
107156219
NCBI-ProteinID:
XP_048653281
LinkDB
All DBs
Position
Unknown
AA seq
646 aa
AA seq
DB search
MRPSSDKRQAVSISKVILQNTKSERDPQQKCDQPLEKCGTNRNEVSENSDDNSAVQVKKK
GGKISQDNLGRKNLHYEHTGYELLPSKLQEGDRNVAISTQTTHRNKKREKWHNEEQIHIT
VWKDTKPEEREIGEDTQGEAMGNWFKVTIPYGRKYDKAWLMNTVQSHCTVPFTPVDFHYI
RNQARFFVQDVKTASALKDISYKICDEENRKISVFVNTSAIPYSMQNKFTPEQMEQLKLT
MSKQYDASQQVLNLQKLRFDSDLVGHDIDMILNRRNCMFATLQIIESNFPELLSLNLQNN
KLYQLDGLSDIIEKAPKVKILNLSKNELRTAKELDKPKGLKLEELWLEGNPLCSTFPDQS
AYVSAIQDCFPNLLRLDGQELSTPVVVDPDAPKLIKPCKESYKGSETLKNLVLQFLQEYY
LIYDYGDRQGLLSAYHDEACFSLTIPFNPKDPAPNSLCKYFKYSRNMKKLKDSNMRRQLL
KHTKHDIVDYLSVLPKTEHDFSCLMIDMWFQTETMLCFSVNGVFKEAEGKSQGCVHAFTW
TFIAIPTNNSSICILNDELIVRNASPDEIQSSFSIPMPALFSTSMPTLSQEQQEMVKVFS
TQSGMKLEWSQKCLEDNEWNYTRAGQVFIMLQTEGKIPEEAFKQLP
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgcggccctcttcagataagcgccaggcagtcagtatttccaaggttattctgcaaaac
actaagtctgagagagacccacaacaaaaatgtgatcaaccattagagaaatgtgggaca
aacagaaatgaagtttcagaaaacagtgatgataacagtgctgttcaagtaaaaaagaaa
ggtggaaaaatttcccaggataatcttggcaggaagaatcttcattatgagcatactggt
tatgaactgcttccttcgaaactccaggagggagatcgaaatgtggcaataagcactcaa
accacccaccgcaataagaagagagagaaatggcataatgaagagcaaatccatattact
gtgtggaaagatacaaaacctgaagagagagaaataggagaggacacacaaggagaagca
atgggcaactggttcaaggttacgattccatatgggagaaagtatgacaaggcatggcta
atgaatacagtccagagccattgcactgtccccttcaccccggtcgatttccactacatc
agaaatcaggcccggttctttgtacaggatgttaaaactgcttctgcattaaaggatatc
agctacaagatttgtgatgaggagaaccgaaagatatctgtctttgtcaatacttctgct
ataccctactctatgcagaataagttcacgccagaacaaatggagcagctaaagctgact
atgagcaaacaatatgatgcctcccagcaagttctcaacctccaaaagctccgttttgac
tcagacttggtgggccatgacattgacatgatcctgaatcgaagaaactgcatgtttgcc
accttgcagatcattgaaagtaatttccctgagctgttgtccttgaacttgcaaaacaac
aaactgtaccagctggatggcctgtctgacattatagagaaggctcccaaagtcaagata
ctaaacctttccaaaaatgagctgaggaccgccaaggagttggacaagccgaaagggctg
aagctggaagagctgtggctagaagggaaccccttgtgcagtactttcccagaccagtct
gcctatgtaagtgctatccaggattgtttccccaatttattacgcctggatggccaggag
ttatccacaccagttgttgttgaccctgatgcccccaaattaataaaaccctgcaaggaa
agctataaaggatctgagaccttaaagaatctagttctgcaattcctacaggagtattac
ctgatctatgactatggagatcgacagggtctacttagtgcttaccatgatgaggcctgc
ttctctctgaccattcccttcaaccccaaggacccagccccaaatagcttgtgcaagtac
ttcaagtatagtaggaatatgaagaagctcaaggattccaacatgcggagacaactgctg
aaacacacaaaacatgacatcgtggactacctcagtgtgttgcccaaaactgagcatgac
ttcagttgccttatgatagatatgtggttccagacggaaacaatgctctgcttctctgtg
aatggggtgttcaaggaagcagaaggaaagtctcaaggatgtgttcatgccttcacctgg
accttcattgctatccctaccaacaattccagtatatgcatcctgaatgatgagttgatt
gtgaggaatgccagccctgatgagatccagagctctttctccatcccaatgcctgcactg
ttttccacctccatgcctaccctctcccaggagcagcaggaaatggtgaaggttttctct
acacagtctgggatgaaacttgaatggtctcaaaagtgccttgaagacaacgagtggaac
tacaccagagctggtcaggtcttcattatgcttcagactgagggcaagatcccagaagag
gccttcaaacagttaccctga
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