Marmota marmota marmota (Alpine marmot): 107156885
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Entry
107156885 CDS
T09644
Symbol
Ighmbp2
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
mmma
Marmota marmota marmota (Alpine marmot)
Brite
KEGG Orthology (KO) [BR:
mmma00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mmma03009
]
107156885 (Ighmbp2)
03012 Translation factors [BR:
mmma03012
]
107156885 (Ighmbp2)
Enzymes [BR:
mmma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
107156885 (Ighmbp2)
5.6.2.5 RNA 5'-3' helicase
107156885 (Ighmbp2)
Ribosome biogenesis [BR:
mmma03009
]
Eukaryotic type
Other ribosome biogenesis factors
107156885 (Ighmbp2)
Translation factors [BR:
mmma03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
107156885 (Ighmbp2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_12
AAA_11
SMUBP-2_HCS1_1B
AAA_30
AAA_19
zf-AN1
Viral_helicase1
nSTAND3
DEAD
ResIII
AAA_22
AAA_16
UvrD-helicase
Helicase_RecD
AAA_25
SLFN-g3_helicase
IstB_IS21
Flavi_DEAD
PhoH
T2SSE
DAP3
AAA_18
AAA
DnaB_C
ABC_tran
UvrD_C_2
NTPase_1
DevR
NPHP3_N
cobW
Motif
Other DBs
NCBI-GeneID:
107156885
NCBI-ProteinID:
XP_048663567
LinkDB
All DBs
Position
Unknown
AA seq
1013 aa
AA seq
DB search
MGTRAWWEPKPRGPGISCPGGWGGPVGAGQARLSERTCLGRRLSSCLCPLSPVGGEAEAG
EGQPEALPWVSCRSWQESISLKELQSRGVCLLKLQVSSQRTGLYGRLLVTLEPRRGGSAG
VLPSNSFTSGDIVGLYGAAHEGGQLASGILTRITQKSVTVAFDESQDLQLDLDRESSYRL
LKLANDVTYKRLKAALVALKKFHSGPASPLIELIFHGSAPSPAGDIGPLVLFNAALDPSQ
KEAVLFALSQKELAIIHGPPGTGKTTTLVEIILQAVKQGLKVLCCAPSNIAVDNLVERLA
HWKQRILRLGHPARLLESIQQHSLDAVLARSDSTQIVADIRKDIDQILVRPGVPVWLSLH
ELHSAFTGCPVPGVAGGKEPIRKQRFLGAPPPPPSSRCLAASVGTGGKQPQAERGKPRRV
VSATGGWNGRCSELTLAAVSVPGGWDRDPESPRWCSWGQPAAHSAVQGWPARCCWASVVA
VAGSDQPPPHPVDQRSLSQPGASADGPLKLLPESHFDVVVIDECAQALEASCWIPLLKAR
KCILAGDHKQLPPTIVSHKAAQAGLSRSLMERLAEEQGASAVRMLTVQYRMHQAIMRWAS
EVMYGGQLDAHPSVAGHLLRDLPGVAATEETGIPLLLVDTAGCGLLELEDHDEQSRGNPG
EVRLVTLHVQALVDAGVQAGDIAVITPYNLQVDLLRQSLAQRHPELEIRSVDGFQGREKE
AVVLSLVRSNRKGEVGFLAEDRRINVAVTRARRHVAVVCDSRTVLNHAFLKTLVDYFTEH
GEVRTAFEYLDDIVPENYSHEASQSHSQAAKPRGPASARPPGRPPGGQQEGGLQAASRRR
RGPKTLAALPRQRVFSPRFARRRGGRSQAWATPVTEVALAICTGLTPLSPGRAAPAAPAE
EDFDTLLSAAMKADSTCAFAKCSASVVTLGQLCQLCGHRYCLSHHLPEVHGCGEKARAHA
RQRISREGVLYAGSGTKDRSLDPAKRAQLQSKLDRKLGELSRQRTSRRKERGT
NT seq
3042 nt
NT seq
+upstream
nt +downstream
nt
atggggaccagggcgtggtgggagccaaagcccagaggtcctggcatcagctgccctgga
ggatggggagggccagttggggcggggcaggctcggctctctgagaggacgtgcctgggc
agacgcttgtcttcctgtctctgtcccctctctcccgtgggcggggaagcagaagctggt
gagggacagccggaagccctgccctgggtgtcttgcaggtcctggcaggagagcatctct
ctgaaggagctccagagccggggcgtgtgtctgctcaagctgcaggtgtccagccagcgc
acggggctgtacggacggctgctggtcaccctggagcccaggcggggtggctctgccggg
gtgcttcccagcaacagcttcacttccggtgacattgtgggtctgtatggtgctgcccac
gaaggtggtcagctggcctctgggatcctgacccgtatcacccagaagtctgtcacggtg
gcctttgacgagtcccaggacctccagttggacttggatcgagagagttcctacaggctg
ctgaagctcgccaatgacgtcacgtacaagcggctgaaggcggctctggtggctctgaag
aagttccactcggggccagcgtccccgctcatagagctgatcttccacggatccgccccc
agccctgccggtgacataggccccctggtgctcttcaatgccgccctggacccctcccag
aaggaagccgtcttgtttgcgctgtcccagaaagagctcgccatcatccacggaccaccg
ggcactgggaaaaccacgaccttggttgagatcatcctgcaggctgtgaagcagggcctg
aaggttctgtgctgtgccccctcgaacatcgcggtggacaatctggtggagcgtctggcc
cactggaagcagcggatcctgcgcctggggcaccctgcccgcctgctggagtccattcag
cagcactctctggacgcggtgttggcgcggagcgacagcacccagatcgtcgcagacatc
aggaaggacatcgaccagatcctggtgcgtcctggcgtccccgtgtggctcagcctgcac
gagctgcactcagcatttacggggtgccctgttccaggcgttgctgggggcaaggaaccc
atcaggaagcagcgtttcctaggtgcccccccgcccccccccagctcccgttgcctggca
gcgagtgttggcaccggcgggaagcagccgcaggcagaaagaggaaagccacggcgggta
gtgtcagcgaccggaggctggaatggccggtgctcagagctcacacttgctgctgtatca
gtaccaggtggctgggaccgggatcccgagtccccccgctggtgttcctggggccagcct
gctgcacacagtgctgtgcaaggctggccggcgaggtgctgctgggcatctgttgtggct
gtggctggatcagatcagccgccaccacaccctgtagaccagaggtctctgtcccaacca
ggagcttctgccgacggccccctgaagctgctgcctgagagccactttgacgtggtggtc
attgacgagtgtgcccaggccctcgaggccagctgctggatccccctgctgaaggctaga
aagtgcatcctggccggagatcacaagcagctgccgcccactatagtctctcacaaggcc
gcgcaggctgggctgtcccgcagcctgatggagcgcctggccgaggagcagggggcgagc
gcggtgcggatgctgaccgtgcagtaccgcatgcaccaggccatcatgcgctgggcctcc
gaggtcatgtacggcgggcagctcgacgcccacccctccgtggccggccacctcctgagg
gacctcccaggcgtggcggccacggaggagacgggcatcccgctgttgcttgtggacact
gccggctgtgggctgctggagctggaggaccatgacgagcagtcgagggggaacccaggt
gaagtccgcctcgtcaccctccacgtgcaggctctggtggatgctggcgtccaggcaggg
gacattgctgtcatcacgccttacaacctccaggtggacctgctcaggcagagcctcgcg
caaaggcacccggagctggagatcaggtctgtggatggcttccagggccgcgagaaggag
gcggtggtcctgtccctcgtcaggtccaataggaaaggtgaagtgggcttcctggccgag
gaccggcggatcaacgtggccgtcacccgcgcacggcgccacgtggctgtggtctgcgat
tcccggaccgtcctcaaccacgcctttctgaagaccttggtggactatttcacagagcac
ggggaggtgcgcacggcctttgagtacctcgacgacatcgtccccgaaaactattcccac
gaggcttcccagagccacagccaggctgcgaagccccggggccccgcctcagccaggcca
cctggacgcccaccgggtgggcagcaggagggaggcctacaagctgccagccgccggagg
cggggcccgaagacactggccgctctccctcggcagcgtgtcttcagcccccgctttgcc
agacgcagaggcggccggagccaggcctgggccacccccgtgacagaggtggcactggcc
atctgcacaggcttgacccctctgtccccaggacgtgcggccccagcggctcctgccgag
gaggactttgacaccctgctgtcggctgccatgaaggccgatagcacctgtgccttcgcc
aagtgctcggccagcgtcgtgaccctcggccagctctgccagctttgtggccaccgctac
tgcctcagccaccacctgcccgaggttcacggctgtggcgagaaggctcgtgcccacgcg
cggcagagaatcagccgcgaaggcgttctctatgcaggcagtgggaccaaggacaggtcc
ctggatccagccaagagggctcagctgcagagcaagctggacaggaagctgggcgagctc
agccgccagaggacgagcaggaggaaggagaggggcacgtga
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