Marmota marmota marmota (Alpine marmot): 107157341
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Entry
107157341 CDS
T09644
Symbol
Xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
mmma
Marmota marmota marmota (Alpine marmot)
Pathway
mmma03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mmma00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107157341 (Xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmma03019
]
107157341 (Xab2)
03041 Spliceosome [BR:
mmma03041
]
107157341 (Xab2)
Messenger RNA biogenesis [BR:
mmma03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
107157341 (Xab2)
Spliceosome [BR:
mmma03041
]
Complex B
Other components
Prp19-related factors
107157341 (Xab2)
Complex C
107157341 (Xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_12
TPR_2
TPR_8
Suf
TPR_19
TPR_15
ARM_TT21
TPR_MalT
ARM_TT21_C
TPR_1
TPR_NPHP3
Motif
Other DBs
NCBI-GeneID:
107157341
NCBI-ProteinID:
XP_015359194
Ensembl:
ENSMMMG00000020949
UniProt:
A0A8C6A774
LinkDB
All DBs
Position
Unknown
AA seq
855 aa
AA seq
DB search
MVVMARVSRPERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA
LKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFL
MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA
EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNV
DAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYA
QFEESMIAAKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEW
HKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARIILEK
ATKVNFKQVDDLASVWCQCGELELRHENYDEALRLLRKATALPARRAEYFDGSEPVQNRV
YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA
YERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYA
QLEEEWGLARHAMAVYDRATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLS
DEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTI
REMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLA
AEAERDQPPRAQSKILFVRSDASREELAALAQQANPEEIQLGEDEDEDEMDLEPNEVRLE
QQSVPAAVFGSLKED
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgatggcgcgcgtctcgcggcccgagcggccagaccttgtctttgaagaagag
gaccttccctatgaggaggaaatcatgcggaaccagttttcagtcaaatgctggctacgc
tacattgaattcaaacagggagctcccaagcccaggctcaatcagctgtatgagcgggca
ctcaagctgctgccctgcagctacaaactctggtaccgctacctaaaggcacgtcgggca
caggtaaagcatcgctgcgtgactgaccctgcctatgaagatgtcaacaactgccatgag
agggcctttgtgttcatgcacaagatgccccgtctatggctagattattgtcagttcctg
atggaccagggacgtgtcacacacacccgccgcaccttcgaccgtgccctccgggcacta
cccatcacccagcactctcgtatttggcccctgtacctgcgcttcctgcgctcccaccca
ctgcctgagacagctgtgcgaggatatcggcgtttcctcaagctgagtccagagagtgct
gaggaatacatcgagtacctcaagtcgagtgaccggctggacgaggctgcacagcgcctg
gccactgtggtgaatgatgagcgctttgtgtccaaggctggcaagtccaactaccagctg
tggcacgagctgtgtgacctcatctcccagaatccggacaaggtgcagtccctcaacgtg
gacgccatcatccgcggtggcctcacccgtttcaccgaccagctaggcaagctgtggtgt
tcactggctgactactacatccgcagtggccactttgagaaggcccgggacgtgtacgag
gaggccatccgcactgtgatgaccgtgcgggacttcacacaagtgtttgacagctatgcc
cagtttgaggaaagcatgattgccgccaagatggagactgcctcagagctggggcgggag
gaggaggatgacgtggacctggagctgcgcctggctcgctttgagcagctcatcagccgg
cggcccctgctcctcaatagtgtcctgctgcgccagaacccacaccacgtccatgagtgg
cataagcgcgtggccctgcaccagggccgccctcgggagatcatcaacacctatacggaa
gccgtgcagacggtggaccccttcaaggctacaggcaagccccacactctgtgggtcgcg
tttgccaagttttatgaggacaacgggcagctggacgacgcccgcatcatcctggagaag
gccaccaaggtgaacttcaagcaggtggatgacctggcaagtgtgtggtgccagtgcggg
gaactggagctccggcacgagaactatgatgaagccctgcggctgctgcggaaggcgaca
gcgctgcccgcacgcagggctgagtactttgatggctcagagcccgtgcagaaccgcgtg
tacaagtccctgaaggtgtggtcgatgctggctgacctggaggagagcctgggcactttc
cagtccactaaggctgtgtatgaccgtatcctggacctgcgcatagccacgccccagatc
gtcatcaactacgccatgttcctggaggaacacaagtactttgaggagagcttcaaggcc
tacgagcgtggcatctccttgttcaagtggcccaatgtgtctgacatctggagcacctac
ctgaccaaattcatcgcccgctacggaggccgcaagctggagagggcacgggacctcttt
gagcaggcgctggatggctgcccacctaaatacgctaagaccctgtacctactgtatgcg
cagctggaagaagaatggggcctggcccggcatgccatggctgtgtatgatcgtgccacc
agggctgtggaacccgcccagcagtatgacatgttcaacatctacatcaagagggctgct
gagatctacggtgtcacccatacccgtggcatctaccagaaggccattgaggtgctgtca
gatgagcatgcgcgggagatgtgcctgcggtttgcagacatggagtgcaaactcggcgag
attgaccgcgccagggccatctacagcttctgctcccagatatgtgacccccggaccact
ggggcattctggcaaacatggaaggactttgaagttcggcacggcaacgaggacaccatc
agggagatgctgcggatccggcgcagtgtgcaggccacatataacacacaggtcaacttc
atggcctcgcagatgctcaaggtgtcgggcagtgcgacaggcacagtgtctgacctggcc
cctgggcagagcggcatggatgacatgaagctgctggagcagcgggcagagcagctcgcg
gccgaggctgagcgggaccagcccccacgggcccagagcaagattctttttgtgaggagt
gacgcgtctcgagaggagctggcagcgctggctcagcaagccaatcccgaggagatccag
ctgggggaggacgaggacgaggacgagatggacttggagcccaacgaggttcggctggag
cagcagagcgttccagccgctgtgtttgggagcctgaaggaagactga
DBGET
integrated database retrieval system
