Marmota marmota marmota (Alpine marmot): 107157893
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Entry
107157893 CDS
T09644
Symbol
Taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
mmma
Marmota marmota marmota (Alpine marmot)
Pathway
mmma03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
mmma00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
107157893 (Taf5l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmma03021
]
107157893 (Taf5l)
03036 Chromosome and associated proteins [BR:
mmma03036
]
107157893 (Taf5l)
Transcription machinery [BR:
mmma03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
107157893 (Taf5l)
Coactivators
SAGA/TFTC/STAGA complex
107157893 (Taf5l)
Chromosome and associated proteins [BR:
mmma03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
107157893 (Taf5l)
STAGA complex
107157893 (Taf5l)
TFTC complex
107157893 (Taf5l)
SAGA complex
107157893 (Taf5l)
SLIK complex
107157893 (Taf5l)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
TFIID_NTD2
EIF3I
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_SCAP
WDR90_beta-prop_4th
ANAPC4_WD40
NBCH_WD40
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_DCAF4
Beta-prop_SPT8
Beta-prop_HPS5
Beta-prop_EIPR1
Beta-prop_Vps41
WD40_RFWD3
PROPPIN
Beta-prop_WDR19_1st
PEP5_VPS11_N
Ge1_WD40
Nbas_N
WD_LRWD1
Beta-prop_DCAF12
Mala_s_1-like
Motif
Other DBs
NCBI-GeneID:
107157893
NCBI-ProteinID:
XP_015359796
Ensembl:
ENSMMMG00000011566
UniProt:
A0A8C6ESN7
LinkDB
All DBs
Position
Unknown
AA seq
620 aa
AA seq
DB search
MRPHGQSSWPQPISGAVARRPYSPTCASPMKVMKRVRTEQLQTAVSCYLKRRQYVDSDGP
LKQGLRLSQSAEEMAANLSVQSESGCANIVSAAPCQAEPQQYEVQFGRLRNFLTDSDSQH
SHEVMPLLYPLFVYLHLSLVQNSPKSTVESFYSRFHGMFLQNAGQKEVIEQLQTTRTVQD
VLSDSRLRAFLDNKYVVRLPEDSYNYLVRYLQSDNNTALCRVLAVHIHLDVQPAKRTDYQ
LYASGGPRGESGSLEPPDVPSPLLQNEAALEVLQDSIKRVKDGPPSLTTICFYAFYNTEQ
LLNTAEVSPDSRLLAAGFDNSCIKLWSLRSKKLKAEPHQVDTSRIRLACDTLEEEDTEDD
GTGTEMKTLRGHCGPVYSTRFLADGSGLLSCSEDMSIRYWDLGTFSNTVLYQGHAYPVWD
LDVSPYSLYFASGSHDRTARLWSLDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKT
VRLWSAQQGNSVRLFTGHRGPVLAVAFSPNGKYLASAGEDQRLKLWDLASGTLFKELRGH
TDSITSLAFSPDSGLVASASMDNSVRVWDIRSACGSAPADGSSSELVGVYTGPMSSVLGV
QFMACNLLLVTGITQENQEH
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgcggccgcatggccagtcttcctggccccagccgatctctggtgcagtggcccgtcgc
ccttacagtcccacctgtgcttcccccatgaaggtcatgaaacgtgtgcgcacggagcag
ctccagacggcagtgtcctgctacctcaaacgccggcagtacgtggactccgatggcccc
ttgaagcaaggcctgcggctatcacagagtgcagaggagatggcggccaacctctcagtc
cagtctgaatcgggttgtgccaacatagtgtctgcagccccttgccaggcagagccccag
cagtatgaagtacagttcggacggctgcggaattttctcactgattctgattcccagcac
agccatgaagtgatgcccctcctctaccctctcttcgtctacctccatctcagcctggtc
cagaacagccccaagagcacggtggagagtttctacagccgctttcatgggatgttcctg
cagaatgcaggccagaaagaggtcattgagcagctgcagaccacacgaacggtccaagac
gtcctgtccgactccaggctccgcgcattcctggacaacaagtacgtggtccgcctgcca
gaggacagctacaactacctggtgcgctacctccagagcgacaacaacaccgcactgtgc
agggtgctggctgtccacatccacctggatgtgcagcctgccaagaggacagactaccag
ctctacgccagtggcggcccccgtggtgagagcggtagcctggagcccccagatgtgccc
agccctctcttgcagaatgaggccgccttggaggtcttgcaggacagcatcaagcgcgta
aaggacgggcctccctccctcaccaccatctgcttctacgccttctacaacacggagcag
ctgctcaataccgccgaggtttcccctgacagcaggctgctggctgccgggtttgacaac
tcctgcatcaagctctggagtctgcggtccaagaagttgaaggcggagccccaccaggtg
gacacatcacgcatccgcctggcttgtgacactttagaggaggaggacactgaggatgac
ggcacgggcacggagatgaagacgctgcggggccactgtggacctgtgtacagcacacgc
ttcctcgcggacggctcagggctgctctcttgctctgaagatatgtccatccgatactgg
gacctgggcaccttcagcaacactgtgctgtaccaggggcacgcctacccggtgtgggac
ttggatgtcagcccctatagcctgtactttgccagcgggtcccacgaccgcactgccagg
ctgtggtcactggatcggacgtaccccctgaggatatacgcaggtcacctggcggatgtg
gactgtgtcaagttccacccgaactccaactacctggctacaggctcgactgacaagact
gtccggctgtggagcgcccagcaggggaactctgtgcggctcttcacgggccaccgcggg
cccgtgctggctgttgccttctctcccaatgggaagtacttggcctccgcaggcgaggac
cagcgattgaagctgtgggacttggcctccgggaccctcttcaaggagctgagaggccac
acagacagcatcaccagcctcgccttcagcccagacagcggcctggtggcctctgcctcc
atggacaactctgtgcgcgtctgggacatcaggagtgcctgcggcagtgcgcctgccgat
ggctcctccagtgagctggtgggcgtgtacacggggcccatgagcagcgtcctgggtgtg
cagttcatggcctgcaacctcctcctggtgacggggatcacacaggaaaatcaggagcat
tag
DBGET
integrated database retrieval system
