Marmota marmota marmota (Alpine marmot): 107158333
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Entry
107158333 CDS
T09644
Symbol
Ddx42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
mmma
Marmota marmota marmota (Alpine marmot)
Pathway
mmma03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mmma00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107158333 (Ddx42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mmma03041
]
107158333 (Ddx42)
Enzymes [BR:
mmma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107158333 (Ddx42)
Spliceosome [BR:
mmma03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
107158333 (Ddx42)
Complex B
107158333 (Ddx42)
Complex C
U2 SnRNP specific factors
107158333 (Ddx42)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
107158333
NCBI-ProteinID:
XP_015360288
Ensembl:
ENSMMMG00000010051
LinkDB
All DBs
Position
Unknown
AA seq
933 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAISAGKKEEPKLPQQSHSAFGATSSSSGFGKSAPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVDLPYIPAENSPTRQQFHSKPADSDSDDDPLEAFM
AEVEDQAARDMKRLEEKDKERKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKV
ISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENTDRGNNNNVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLSNQ
KAGSSAAGASGWTSAGSLNSVPTNSAQQGHNSPDNPITSAATKSIPGFGNTGNITSAPVT
YPSVGAQGVNNTASGNNSREGIGGGNGKRERYTENRGGGRHSHGESGNRHGDSPRHGDGG
RHGDGYRYPESSSSRHTDSHQHGENRHGGSTGRHGESRGANDGRNGESRKEGCNRESKVD
SSKMDKMDSKTDKTVDGFAVPEPPKRKKSRWDS
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaataaaggtggcccgggcactaagcggggatttggtttcggaggttttgcc
atcagtgctgggaagaaggaggaacctaaactcccacaacagtcccatagtgcctttggg
gcaactagctcatcttctggatttgggaagtcagctccaccacagcttccttccttctac
aaaattggatctaagcgagccaactttgatgaagaaaatgcctattttgaagatgaggaa
gaagactctagcaatgttgacttaccttacattcctgctgaaaactcacctacccgccag
cagtttcattccaagccagcagattctgacagtgatgatgatcccttggaagcatttatg
gctgaagtggaggatcaggcagctagagacatgaagaggcttgaagaaaaggacaaggaa
agaaaaaacgtaaagggtattcgagatgacattgaagaggaagatgaccaagaagcttat
tttcgatacatggcagaaaacccaactgccggtgtggttcaagaggaagaagaagacaat
ctggaatatgatagtgatgggaatccaatcgcaccttccaaaaaaataatcgatcctctt
ccgcccattgatcattcagagattgactacccaccatttgaaaaaaatttttacaatgag
catgaggagataaccaacctcactccacaacagttaatagatctccggcataagctcaat
cttcgggtttctggtgctgcacctcctagaccaggaagtagttttgctcattttggattt
gatgaacaacttatgcatcagattcggaaatctgagtacacacagcccactccaatacaa
tgtcagggtgtgcctgtggcattaagtggtagagacatgattggtattgccaaaacaggc
agtggaaaaactgcagcctttatctggcccatgttgattcatataatggaccagaaggaa
ttggaaccaggtgatggaccaattgcagtgattgtgtgtcctactagggagctttgtcag
cagatccatgcagaatgtaagcggtttgggaaagcatataatcttcgatcagtggctgtg
tatggaggagggagcatgtgggagcaagccaaggcccttcaggaaggggcagagattgtt
gtgtgtaccccaggtcgactgattgatcatgtgaagaagaaagctactaatcttcaaaga
gtctcttaccttgtatttgatgaagcagatcgaatgtttgatatgggatttgagtaccag
gttcgatccatagcaagtcatgttcgtcctgacagacagactctcttattcagtgcaact
tttcggaaaaagattgaaaaactggcgagagatatcctaattgaccctattcgagtggtg
cagggagatattggagaggcaaatgaagatgtgacacagattgtggagattctccattct
gggcctagtaaatggaactggcttacccggcgtctggtggaatttacttcttccgggagt
gtcctcctgtttgttactaaaaaagctaatgccgaagagctagccaataaccttaagcag
gagggtcataatcttgggttgcttcatggggacatggatcagagtgaaagaaacaaggtc
atttctgactttaagaaaaaggacatcccagtcctagtagccacagatgttgcagcccgt
ggtctggacattccttcaattaagactgtcattaactatgatgtggcacgagacattgat
acccatactcacaggattggccgcacaggaagagctggtgagaaaggtgtagcctatacc
ctgttgacccctaaggacagcaattttgctggtgaccttgtgcggaacttggaaggagcc
aatcagcatgtttccaaggaacttctggacctggcaatgcagaatgcttggtttcggaaa
tcccgcttcaaaggaggaaaaggcaaaaagctgaacattggtggaggaggcctaggctat
agggagcgacctggcctaggctctgagaacacggaccgaggaaataacaacaatgtaatg
agcaattatgaggcctataagccttccacaggagccatgggagatcggctgacagcaatg
aaagcagcttttcagtcacagtacaagagtcactttgttgcagccagtttaagtaatcag
aaggctggaagctctgctgctggggcaagtggatggactagtgcagggagcttgaattct
gttccaactaattcagcacagcagggccataacagtcctgacaaccccatcaccagtgcc
gccaccaagagcatcccaggctttggcaatacagggaacatcaccagtgctccagtgacc
tacccttctgtcggagcccagggagtcaacaacacagcttcaggaaataacagcagagaa
ggaattgggggtggcaatgggaagcgagagagatatactgagaatcggggtggtggccgc
catagccatggagagagtggcaatcggcatggtgatagtccacggcacggagacggtggt
cgacatggagatggataccgctacccagaaagtagcagcagccgccatactgacagccat
cagcatggggagaacaggcatggaggaagtacaggccggcatggggaaagccggggtgca
aatgatggtcggaatggagaaagcaggaaagaaggttgtaatcgtgaaagcaaggtggac
agcagcaagatggacaagatggacagcaagacagataagacagtggatggttttgctgtc
cctgagccacccaaacgcaagaaaagtagatgggacagttag
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integrated database retrieval system
