Marmota marmota marmota (Alpine marmot): 107158351
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Entry
107158351 CDS
T09644
Symbol
Ddx5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
mmma
Marmota marmota marmota (Alpine marmot)
Pathway
mmma03040
Spliceosome
mmma05202
Transcriptional misregulation in cancer
mmma05205
Proteoglycans in cancer
Brite
KEGG Orthology (KO) [BR:
mmma00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107158351 (Ddx5)
09160 Human Diseases
09161 Cancer: overview
05202 Transcriptional misregulation in cancer
107158351 (Ddx5)
05205 Proteoglycans in cancer
107158351 (Ddx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mmma03041
]
107158351 (Ddx5)
03009 Ribosome biogenesis [BR:
mmma03009
]
107158351 (Ddx5)
Enzymes [BR:
mmma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107158351 (Ddx5)
Spliceosome [BR:
mmma03041
]
Complex A
U1 snRNP components
U1 related factors
107158351 (Ddx5)
Complex B
107158351 (Ddx5)
Ribosome biogenesis [BR:
mmma03009
]
Eukaryotic type
Pre-60S particles
Helicases
107158351 (Ddx5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
P68HR
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
BNIP2
Motif
Other DBs
NCBI-GeneID:
107158351
NCBI-ProteinID:
XP_015360315
Ensembl:
ENSMMMG00000010795
UniProt:
A0A8C5ZEE3
LinkDB
All DBs
Position
Unknown
AA seq
614 aa
AA seq
DB search
MSGYSSDRDRGRDRGFGAPRFGGSRAGPLSGKKFGNPGEKLVKKKWNLDELPKFEKNFYQ
EHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAI
QAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELA
QQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLR
RTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHI
NIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRK
MRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPN
SSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQLVEDRGS
GRSRGRGGMKDDRRDRYSAGKRGGFNTFRDRENYDRGYSSLLKRDFGAKTQNGVYSAANY
TNGSFGSNFVSAGIQTSFRTGNPTGTYQNGYDSTQQYGSNVPNMHNGMNQQAYAYPATAA
APMIGYPMPTGYSQ
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggttattcgagtgaccgagaccgcggccgggatcgagggtttggtgcacctcga
tttggagggagtagggcagggcccctatctggaaagaagtttggaaatcctggggagaaa
ctagttaaaaagaagtggaaccttgatgagttgcccaaatttgagaagaatttttatcag
gaacaccctgatttggccagacgcacagcacaagaagtagagacatacagaagaagcaag
gaaattacagttagaggtcacaactgtccaaagccagtactgaatttctatgaagcaaac
ttccctgcaaacgtcatggacgtgattgcaaggcaaaacttcacggaacccactgcaatt
caagctcagggatggccagttgctctaagtggattggatatggttggagtagcacagact
ggatctggaaaaacattgtcttatttgttgcctgccatcgtccacatcaatcatcagcca
ttcctagagagaggtgatgggcctatttgtttggtactggcaccaactcgggaactggcc
cagcaggtgcagcaagtagctgctgaatactgcagagcttgtcgattgaagtctacttgc
atctatggtggtgctcccaagggaccacagatccgtgatttggagagaggtgtggaaatc
tgtattgcaacacctggaagactgattgactttttagaatgtgggaaaaccaatctgaga
agaacaacctaccttgtccttgatgaagcagataggatgcttgatatgggctttgaaccc
caaataaggaagattgtggatcagataagacctgataggcaaaccctaatgtggagtgcg
acttggcctaaagaagtaaggcaacttgctgaagatttcctgaaagactatattcatata
aacattggtgcactagaactaagtgcaaaccataacattcttcagattgtggatgtatgt
cacgacgtagaaaaggatgaaaaacttattcgcctgatggaagagatcatgagtgagaag
gagaataaaaccattgtttttgttgaaaccaaaagaagatgtgatgagcttactagaaaa
atgaggagagatgggtggcctgccatgggtatccatggtgacaagagtcaacaggaacgt
gactgggttctaaatgaattcaaacacggaaaagctcctattctgattgctacagatgtg
gcctccagagggctagatgtggaagatgtgaaatttgtcatcaattatgactaccctaac
tcctcagaggattatattcatcgaattggaagaactgctcgcagtaccaaaacaggcaca
gcatacactttctttacacctaataacataaagcaagtgagcgaccttatctctgtgctt
cgtgaagctaatcaagcaattaatcccaagttgcttcagttggtcgaagacagaggttca
ggtcgttccaggggtagaggaggcatgaaggatgaccgtcgggacagatactctgcgggc
aaaaggggtggatttaatacctttagagacagggaaaattatgacagaggttactctagt
ctgcttaagagagattttggggcaaaaactcagaatggtgtttacagtgctgcaaattat
accaatgggagctttggaagtaattttgtgtctgctggtatacagaccagttttaggact
ggtaatccaacagggacttaccagaatggttatgatagcactcagcaatatggaagtaat
gttccaaatatgcacaatggtatgaaccaacaggcatatgcatatcctgctactgcagct
gcacctatgattggctatccaatgccaacaggatattctcaataa
DBGET
integrated database retrieval system
