Marmota marmota marmota (Alpine marmot): 107158657
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Entry
107158657 CDS
T09644
Symbol
Ddx54
Name
(RefSeq) ATP-dependent RNA helicase DDX54
KO
K14808
ATP-dependent RNA helicase DDX54/DBP10 [EC:
5.6.2.7
]
Organism
mmma
Marmota marmota marmota (Alpine marmot)
Brite
KEGG Orthology (KO) [BR:
mmma00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mmma03009
]
107158657 (Ddx54)
Enzymes [BR:
mmma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107158657 (Ddx54)
Ribosome biogenesis [BR:
mmma03009
]
Eukaryotic type
Pre-60S particles
Helicases
107158657 (Ddx54)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DBP10CT
ResIII
Motif
Other DBs
NCBI-GeneID:
107158657
NCBI-ProteinID:
XP_015360627
Ensembl:
ENSMMMG00000022290
LinkDB
All DBs
Position
Unknown
AA seq
862 aa
AA seq
DB search
MLCPGSAEKLMELERQAVGSPPCLWGLTAWSDCAWSVLFSQLGPGRPLPTFPTSECTSDV
EPDTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVV
AMARTGSGKTACFLLPMFERLKARSAQTGARALILSPTRELALQTMKFTKELGKFTGLKT
ALILGGDKMEDQFAALHENPDIIIATPGRLVHVAVEMSLKLQSVEYVVFDEADRLFEMGF
AEQLQEIIGRLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDAKLNEQLKTSFLL
VREDTKAAVLLHLLRNVVRPQDQTVVFVATKHHAEYLTELLTAQRVSCAHIYSALDQTAR
KINLARFTHGKCSALIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGT
AYSLVAPDEVPYLLDLHLFLGRSLALAPPHQEPSGAAGTDGVLGRVPQSVVDDEDCGLRN
TLEASLELRSLGRVADNAQQQYVRSRPAPSPESIKRAKELDVAGLGLHPLFSARFEEGEL
QRLRLVDGIRSYRACSTIFEINASSRDLSSQVMRAKRQKDRKAIASFQQGRKERQERQKG
LAGPSQRCPAPQEQPEKEEEVEGEDVEHVFTEVVGQKRQRPVSHGGAKRRRAEAQQQDQE
FYVPYRPKDFDSERGLSVGGIGGAFEQQVAGAVLDLMGDEAQNLTRGQQQLKWDRKKKRF
VGQSGQEDKKKIKTESGRYISSSYKRDLYQKWKQKQKIDDRDSEEEGTFDGRGPARRGGK
RGRGQGASQSRAPGAPIGHVRSELKTKQQILKQRRRAQKMRFLQRGGLKQLSARNRRRVR
ELQQGAFGRGAPSRKGKMRKRM
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atgctgtgtcctggctcagctgagaaattgatggagctggagagacaggccgtgggcagc
cccccctgcctctggggtctgactgcttggagtgattgtgcctggtctgttctcttctcc
cagctggggcctggcaggcccctgcccacctttcccacctcagagtgcacctcagatgtg
gaaccagacacccgggagatggtgcgagcccagaacaagaagaagaagaagtctggaggc
ttccagtccatgggcctgagctaccccgtgttcaaaggcatcatgaagaagggctacaag
gtgccgacgcccatccagaggaagaccatcccagtgatcctggacggcaaggacgtggtg
gccatggcccggaccggcagcggcaagacggcctgcttcctgctccccatgttcgagcgg
ctcaaggcccgcagcgcccagaccggggcccgtgccctcatcctctcgcccacccgggag
ctggccctgcagaccatgaagttcactaaggagctgggcaagttcactggcctcaagact
gccctgatcctgggaggggacaaaatggaagaccaattcgcagccctgcacgaaaatcct
gacataatcatcgccacccccgggcggttggtgcacgtggctgtggagatgagcctgaag
ctgcagagcgtggagtatgtggttttcgatgaagccgacaggctctttgaaatggggttt
gcggagcagctgcaggagatcatcggccgcctccccgggggccatcagacggtgctgttc
tctgccacgctgcctaagctgctggtggagtttgcccgggcaggcctcacggagcccgtg
ctcatccggctggacgtggacgccaagctgaacgagcagctcaagacctccttcctcctg
gtgcgcgaggataccaaggccgcggtgctgctgcacctgctgcgcaacgtggtgcggccc
caggaccagacggtagtgttcgtggccaccaagcaccacgccgagtacctcacggagctg
ctgacggcccagcgggtcagctgtgcccacatctacagcgccctggaccagacggcccgc
aagatcaacctggccaggttcacacacggcaagtgctctgccctcatcgtgaccgacctg
gcagcccggggcctggacatcccgctgctggacaacgtcatcaactacagcttccccgcc
aagggcaagctcttcctgcaccgcgtgggccgtgtggcccgcgctggccgaagtggcaca
gcctactccctggtggccccagacgaggttccctacctgctggacctgcacctgttcctg
ggccgctccctggccctggcaccaccccaccaggagccttcaggtgctgcgggcaccgac
ggcgtgctgggcagggtgccgcagagtgtggtggacgacgaggactgcggcctgaggaac
accctggaggcgtccctggagctgcggagcctgggccgcgtggcggacaacgcccagcag
cagtacgtgcgctcgcggccagcaccgtcgcccgagtccatcaagagggccaaggagctg
gacgtggcagggctgggcctgcaccccctcttcagcgcgcgcttcgaggagggggagctg
cagcggctgaggctggtggacggcatcaggagctaccgcgcatgctcgaccatctttgag
atcaatgcctccagccgggacctgagtagccaggtgatgcgtgccaagcggcaaaaggac
cgcaaagccatcgccagcttccagcagggacgaaaggagcgacaggagcgtcagaaaggt
ctggctggcccctcccagcgctgccctgcacctcaggagcagcccgagaaggaagaggag
gtcgagggagaggatgtggagcatgtcttcacagaggtcgtgggccagaagcggcagagg
ccagtatctcacggaggagccaagagacggagggcggaggcccagcagcaagaccaggag
ttctacgtcccctatcggcccaaggactttgacagcgagcgggggctgagtgtcggtggg
attgggggagccttcgagcagcaggtggctggtgccgtcctggacctgatgggggacgaa
gcgcagaacctgaccagaggccagcagcagctcaagtgggaccggaagaagaagcggttt
gtgggacagtcaggacaggaggacaaaaagaagatcaagaccgagagcggccgctacatc
agcagctcctacaagcgggacctctaccagaagtggaaacagaaacagaaaattgatgat
cgtgactcagaggaggaagggacatttgatgggcgaggtccagcccgaagaggtgggaag
cgagggcgtggccaaggtgcatcccagtcccgcgccccgggtgcccccataggccacgtg
cgctctgagctcaagaccaagcagcagatcctgaagcagagacgccgggcccagaagatg
cgcttcttgcagcgcgggggcctcaagcagctctccgctcgcaaccgccgccgggtccgg
gagctgcaacagggcgcctttggccgcggtgccccctccaggaagggcaagatgaggaag
aggatgtaa
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integrated database retrieval system
