Marmota marmota marmota (Alpine marmot): 107159739
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Entry
107159739 CDS
T09644
Symbol
Polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1 isoform X1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
mmma
Marmota marmota marmota (Alpine marmot)
Pathway
mmma03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mmma00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
107159739 (Polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmma03021
]
107159739 (Polr1a)
Enzymes [BR:
mmma01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
107159739 (Polr1a)
Transcription machinery [BR:
mmma03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
107159739 (Polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
107159739
NCBI-ProteinID:
XP_015361842
Ensembl:
ENSMMMG00000008920
LinkDB
All DBs
Position
Unknown
AA seq
1709 aa
AA seq
DB search
MSGSRHTPWRRLQGVSFGMYSAEELRKLSVKSITNPRYLDSLGNPSANGLYDLALGPADS
KEVCSTCVQDFNNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVVHLL
VCQLRVLEVGALQAVYELERILSRFLEENADPSAFEIQEELEQYTTKVLQNNLLGTQGAH
VKNVCESRSKLIAYFWKAHMSAKRCPHCKTGRSVVRKEHNSKLTITYPAVVHRKSGQTDA
EPLGIEEAQMGKRGYLTPSSAREHLFSIWKNEGFFLNYLFSGLVDVGMESRFNPSMFFLD
FVVVPPSRYRPVNRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQQLPCGVAALST
DEEKDSLVAMDRSFLSTLPGQTLTDKLYNIWIRLQSHVNIVFDSEMDKLMMEKYPGIRQI
LEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQEL
RQAVINGPNVHPGASMVINEDGSRTALSAVDITQREAVAKQLLTPATGAPKPQGTKIVCR
HVKNGDILLLNRQPTLHRPSIQAHHARVLPGEKVLRLHYANCKAYNADFDGDEMNAHFPQ
SELGRAEARVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTTRGCFFTREQYVELLYRG
LTDKAGRVKLLPPAILKPFPLWTGKQVVSTLLINIIPEDYVPLNLSGKAKISGKAWVKET
PRPVPGFNPDFMCESQVLIRDGELLCGVLDKAHYGSSAYGLVHCCHEVYGGETSGRVLTC
LARLFTAYLQLYRGFTLGVEDILVRPKADVKRRRIIEESTHCGPQAVRAALNLPEAASCD
EVRGKWEDAHLGKDQRDFNMIDLKFKEEVNRYSNEINKACMPLGLHRQFPENNLQMMVQS
GAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYRFTPRAGGFVTGRFLTGIQ
PSEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYG
EDGLDIPKTQFLQPKQFPFLASNYEVIMRSKHLHEVLSRADPKKALRHFRAIKKWHSRRS
SGPLRRGAFLSYSQKVQDTVRALNLKGENRNGRSPEAQQVLQMWYELDEKSRQKYQRKAA
PCPDPSLSVWRPDIYLASVSEHFEKKIDDYSQEWALEAEKSYKKSELSLDRLRTLLHLKW
QRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIK
TPMMSVPVFNTKKALRRVRSLKKQLTRVCLEEVLQKVDVQESFCMGEKQNKFRVYQLRFQ
FLPHEYYKQEKCLRPEDILHFMETRFFRLLMESVRKKHSKDSSFRSVNTRRATQQDLEGT
GQSETRRGEQEGEEEEEGDIVNADAEEGDADASDAKRKQKQEEEVDYESEEEEEKEEEEE
DAQEEGDADGEGGPQAREPDETTGSGPNEDTPPSPPLCPGPQGTEAVERRVQAVREAHSF
IEDYQYDTAESLWCQVTMKLPLVKANFDMGSLLASLARSTVVYSTRGITRCLLSETTSSR
NGKELMLSTEGINLPELFKYAEVLDLRRLYSNDIHAMASAYGIEAALRVIEKEIKDVFAV
YGIAVDPRHLSLVADYMCFEGVYKPLNRFGIQSNSSPLQQMTFETSFQFLKQATMMGSHD
ELRSPSACLVVGKVVKGGTGLFELKQPLR
NT seq
5130 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggctccaggcacacgccctggcggcggctgcagggcgtttccttcgggatgtat
tcggccgaggagctcaggaaattaagcgttaaatctatcacaaaccctcggtacctggac
agcttggggaacccatcagcaaacggcctatatgacttagctttgggccctgcggattct
aaagaggtgtgctccacctgtgtgcaagatttcaacaactgctccggacacctaggccac
attgaactgccactcacagtgtacaacccgctcctctttgataaactctacctgctcctc
cgaggctcctgtttaaactgccacatgctgacttgtccccgggctgtggttcacctcttg
gtctgccagctgagagttctggaagttggggccctacaagcagtctatgagctggagcga
attctgagcaggtttctggaagaaaatgctgatccttctgcctttgaaattcaggaagag
ttagaacagtacacaaccaaggttctgcagaacaacctcctggggactcagggcgcacac
gtgaaaaatgtgtgtgagagcagaagcaaactcattgcttacttctggaaggcacacatg
tctgctaagcgatgtccccactgcaagactgggcggtcagttgttcgaaaggagcacaac
agcaagctgacaatcacatatccagctgtggtgcacaggaagtctggccagacggatgcc
gagcccctgggaattgaggaagctcagatgggaaaacgagggtacttgacgcccagcagt
gcccgggaacatcttttctccatttggaagaatgaagggttctttctgaattaccttttc
tcgggactggtcgatgttggcatggaatccagattcaatccgagtatgttctttttagat
ttcgtggtggtgcctccctccaggtatcgccctgtcaatcgcctgggggaccagatgttt
accaatggccagacggtgaacttgcaggctgtcatgaaggatgtcgttctgatccggaaa
cttctggcactgatggcgcaagaacagcagctgccctgtggggtggcagcgctcagcaca
gatgaggaaaaagactctttggtggctatggaccggtcctttttaagtacacttccaggc
cagactctcacagacaagctgtacaacatttggattcgccttcagagccacgtcaacatt
gtgtttgacagtgagatggacaaactcatgatggaaaagtaccctggcatcagacagatc
ttggagaagaaagaaggcctgttccgaaagcacatgatgggcaagcgggtagactacgcg
gcccgctctgtcatctgcccagacatgtacatcaacaccaacgagatcgggattcccatg
gtgtttgccacaaaactgacctaccctcagccagtgaccccctggaatgtccaggaactg
agacaggcagtcatcaatggtcccaatgtgcacccgggagcctccatggtcatcaatgag
gatggcagtcgcacagccctgagcgccgtggacataacccagcgtgaagccgtggccaaa
cagctcctgacaccagccacaggggcacctaagccccaggggacaaaaattgtgtgccgg
catgtgaagaatggggacatcctcctgctgaaccgacagcccaccctgcacaggccctcc
atccaggcccaccacgcccgtgtcctaccgggggagaaggtcctgcggctgcactacgcc
aactgcaaggcctacaacgctgactttgatggcgacgagatgaacgcccacttcccccag
agcgagctgggccgggccgaggcccgggtgctggcctgcactgaccagcagtacctcgtt
cccaaggatggacagccattagcagggctgatccaggatcacatggtttcaggtgcaaac
atgaccactcgaggttgctttttcacccgggaacagtacgtggagttgctgtaccgagga
ctcacagacaaagcggggcgcgtgaagcttcttcctcctgccatcctgaagccctttcca
ctgtggaccgggaagcaggtcgtgtcaacactgctcataaacataatccccgaggactat
gtcccactgaacttgtccggaaaggcaaaaatcagcgggaaggcctgggtgaaggagact
cctcggcctgttcctggctttaaccctgacttcatgtgcgagtcccaggtgctaatccgc
gacggggagctgctctgcggagtgctggacaaggcgcactatgggagctccgcctatggc
ctggtgcactgctgccacgaggtctacgggggcgagaccagcggcagggtcctcacctgc
ctggcccggctcttcaccgcctacctgcagctctaccgaggcttcaccctgggtgtggaa
gacattttggttaggccaaaggcagatgtgaagagacgtaggatcattgaggaatccacc
cactgtgggccccaggctgtccgggctgcactaaacctgccagaagccgcatcatgtgat
gaggtccgagggaagtgggaggatgcccatctgggcaaggaccagagggattttaacatg
atcgatctgaagttcaaggaggaggtgaaccgctacagcaatgagattaacaaggcgtgt
atgcctcttggtctgcacaggcagttcccagagaacaacctgcagatgatggtgcagtcg
ggggccaaagggtcaaccgtgaacacaatgcagatctcatgcctgctgggacagatcgag
ctagaggggcggaggcccccattgatggcgtctggcaagtcactgccctgcttcgagccc
tacaggttcacccccagggctggcggcttcgtcactgggaggttcctcaccggcattcag
ccctccgagttcttcttccactgcatggcggggcgtgagggcctggtggacacagcagtc
aagaccagccgttccggctatctgcagaggtgcatcatcaaacacttggaggggctggtg
gtccagtacgatctgacggtccgggacagcgacggcagcgtggtgcagttcctgtatggg
gaggacggtctggacatccccaagacgcagttcctgcagcccaagcagttccccttcctg
gccagcaactacgaggtgataatgagatccaagcacctccatgaagtcttatccagagca
gatcccaaaaaggccctccgccacttcagagctatcaaaaaatggcacagcaggcgttcc
agcgggccgctgagaaggggagccttcctaagttattcccagaaggtccaggacactgtg
agggcgctgaacctgaaaggcgagaacaggaatggtcgcagcccagaggcccagcaggtg
ttgcagatgtggtacgaattagatgagaagagccggcagaagtaccagaggaaggcggcc
ccttgtcctgaccccagtctgtctgtctggcgcccagatatctacttggcgtctgtgtca
gaacattttgaaaaaaagattgatgactacagtcaagaatgggcacttgaagcagaaaag
agttacaagaaatcggagctttctctggacaggttgaggaccctgctgcatctcaaatgg
cagcgctcgctctgcgacccgggtgaggctgtgggcctgctggccgcccagagcatcggg
gagccgtccacgcagatgaccctgaacaccttccactttgcaggcagaggcgagatgaac
gtcaccctgggtatcccaaggttgagggagattctcatggtggccagcgccaacatcaag
acacccatgatgagtgtgcccgtgttcaacaccaagaaagccctaaggagagtgaggagc
ctgaagaagcagctcaccagggtgtgcttagaggaggtgttgcagaaagttgacgtccag
gagtccttctgtatgggagaaaaacagaacaaattccgggtgtaccagctgcggttccag
ttcctgccacacgagtactacaagcaggagaagtgcctaaggcccgaggacatcctgcac
ttcatggaaacaaggttcttcaggctcctgatggagtccgtcagaaagaagcacagtaag
gattccagcttcagaagcgtgaacactcggagagccacacagcaggacctggaaggcaca
gggcagtcggagacgaggcggggtgagcaggaaggggaggaggaggaggaaggggacatc
gtgaacgctgacgccgaggagggggatgctgacgcctccgatgccaagcgcaagcagaag
caggaggaggaggtggattatgagagcgaggaggaggaggagaaggaagaggaggaggag
gacgcacaggaggaaggggacgccgacggtgaaggtggcccccaggcccgtgagccagat
gagaccacaggctcgggccccaatgaggacacgcccccgagccctcccctctgcccaggg
ccccagggaaccgaggccgtggagcgtcgagtgcaggctgtgcgggaggcccactctttc
atagaggactaccagtatgacaccgcagagagcctgtggtgccaggtgaccatgaagctg
cctctggtgaaggccaactttgacatgggctcgctgcttgcgtccctggcccgcagcacc
gtggtctactccaccaggggcatcacccggtgcctcctgagtgaaacgacctccagtagg
aacgggaaggagctcatgctgagcacggagggaatcaacctcccagagctgttcaagtat
gctgaggtgctggacctgcgccgcctctactccaacgacatccacgccatggccagcgcg
tatggcatcgaggccgccctgcgggtgattgagaaggagatcaaggacgtatttgccgtg
tatggcattgccgtcgatcctcgccatctctccctggttgctgattacatgtgcttcgag
ggggtctacaagcccctgaatcgctttggcatccagtcgaactcctcccctctccagcag
atgacatttgagaccagtttccagtttctgaagcaggccaccatgatggggtcccatgac
gagctgaggtccccttcagcctgcctcgtggtcgggaaggtcgtcaagggtggaacaggc
ctgtttgagctcaagcagcccctgaggtag
DBGET
integrated database retrieval system
