Candidatus Midichloria mitochondrii: midi_01012
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Entry
midi_01012 CDS
T01561
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
mmn
Candidatus Midichloria mitochondrii
Pathway
mmn02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
mmn00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
midi_01012 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmn03021
]
midi_01012 (rpoD)
Transcription machinery [BR:
mmn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
midi_01012 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
Sulfotransfer_2
DSBA
Motif
Other DBs
NCBI-ProteinID:
AEI89291
UniProt:
F7XTT2
LinkDB
All DBs
Position
complement(954737..956626)
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AA seq
629 aa
AA seq
DB search
MSTAKKKDTPPVTNNEEALLKDPLKKVKDGPIITDDELKALSNAQDTEGDTVLDPIDGIS
IGGSKHSEEDDMELDLFGNKSESDSDLTSESEENEDAAPRSDDPVRFYLKEMGGQMLLTR
EKEVEVAKNIEEGRRKRIAYLCHSPLAVRSIIKWYEDLTHDVISLRNIIDLDARYSGEFQ
KHDFSSTETEENEKFDTNEEGAEEAEEDGFENASILRMESELRPKVIESLSKAFELGEEI
LKLQQEKLALALKGAKPDRAQQDNYENLISQLSDVMLELKLNESNIEKLLEELYEANKNL
IKLEMNFLKLAMECGIDRNIFLKDYLGNELNPNWIEKISQNPKYSKFIENGKVEELRQQL
RQVATNLGIDIESFKELVVEVQKSERMVTRAKKEMIEANLRLVISIAKKYANRGLQFLDL
IQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIL
RTSRQIMHDIGREPTPDEISKKLGMPVEKVRKVLKIAKEPMSLENPVGAEGDEGSVLGDF
IEDKNALQPIDSAVRSNLREVTTRVLASLTPREERVLRMRFGIGVNTDHTLEEVGQQFSV
TRERIRQIEAKALRKLRRPNRAKKLKGFA
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacagcaaagaaaaaagatactcctcctgtaacaaataacgaagaagcattattg
aaggatcctttaaagaaagttaaagatggcccaataattacagatgacgagcttaaagct
ttatcaaatgcacaagatactgagggtgataccgtactagatccaattgatggtatatct
attggaggctcaaaacatagtgaagaagatgatatggaattagatttatttggtaataaa
tcagagtctgattcggacctaacttcagaatctgaggaaaacgaggatgctgctccaagg
agcgatgaccctgtcagattctacttgaaagaaatgggcgggcagatgcttctcactcgg
gaaaaagaagtcgaggttgcaaaaaatattgaagaaggccgcagaaaaagaattgcttat
ctttgccatagtcctttggcagtgcgctctattataaaatggtacgaggatttaacccat
gatgtaattagcttaagaaacatcatagacttggatgctagatattctggagaattccaa
aaacatgatttttccagtactgaaaccgaagaaaatgagaaattcgatacaaatgaagag
ggagctgaagaagcggaagaagacggcttcgaaaatgcttctatcttaagaatggaaagc
gaattaaggcctaaagttatagagtccttaagtaaagctttcgaacttggagaagagata
ttgaagctgcagcaagaaaaacttgcattagctctaaaaggggcaaagccagacagagca
cagcaagataattatgaaaatctaatctcgcagctttcagatgtgatgttggaattgaaa
ttgaatgaaagcaacatagaaaagcttttagaagaattatacgaagccaacaaaaatctt
attaaacttgagatgaatttcctaaaacttgcaatggaatgtggaattgataggaatata
tttttgaaagattatttaggaaatgagttaaatccaaattggattgaaaagatctctcaa
aatcctaaatatagcaagttcattgagaatggaaaggtagaagaacttcgtcaacaattg
cgtcaagttgcaactaacctaggtattgacatagaaagctttaaagaattagtagtggaa
gtgcaaaaatctgaaaggatggtaacccgagctaaaaaagagatgatagaagctaattta
agattagtcatatcgattgctaaaaaatatgctaatcgtggattacaatttctagattta
atccaagagggtaatattggcttaatgaaggcagtagataagtttgaatatagaagaggt
tacaaattttcaacttatgctacatggtggataagacaagccatcactcgctctattgca
gatcaagcaagaaccatccgaattcctgtccatatgatagaaacgattaataagattctt
cgcacctcaagacaaattatgcatgatataggtagagagccaactcctgatgagatctca
aaaaaacttggaatgccagttgagaaggtaaggaaagttttaaaaattgctaaagaacca
atgagcctagaaaatcctgttggagctgaaggcgatgaaggaagtgttcttggggacttt
atcgaagataaaaatgccttacagccaattgactctgcggtacgatccaatttaagagaa
gtaaccactagggttcttgcctctcttacgccaagagaggaaagagttttacgaatgagg
tttggtataggggtaaatactgatcacactcttgaagaagttggacaacaattttcggtt
accagagaaagaattaggcaaattgaagcaaaagctttacgcaaacttcgcaggcctaat
agagctaaaaagcttaaaggttttgcataa
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