Candidatus Methylospira mobilis: F6R98_13010
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Entry
F6R98_13010 CDS
T06248
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
mmob
Candidatus Methylospira mobilis
Pathway
mmob03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mmob00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
F6R98_13010 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mmob03400
]
F6R98_13010 (recD)
Enzymes [BR:
mmob01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
F6R98_13010 (recD)
DNA repair and recombination proteins [BR:
mmob03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
F6R98_13010 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
Viral_helicase1
AAA_11
AAA_22
SH3_13
Helicase_RecD
UvrD-helicase
UvrD_C
SLFN-g3_helicase
AAA_5
AAA_16
TraI_hel_assoc_N
PhoH
Mg_chelatase
AAA_28
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
QFY43422
UniProt:
A0A5Q0BJW9
LinkDB
All DBs
Position
complement(2874290..2876194)
Genome browser
AA seq
634 aa
AA seq
DB search
MHISAESVLHFVDESLKSGELSRLDRAFMLFLRNIDTNASPLVWLAGAWASRQVSRGHVC
LNLEAWANNGLEESALQSCTLDQWLDALRHSLLVGAGAGNTPLVLDGRNLYLRRYWQYEQ
SVAAAVKQRAAQPALKLPGDLRARLNRLFYDGTQKPDWQKIACAVALRARFSIITGGPGT
GKTSTVTRLLALLVDIAGNSENGGRKPIIRLAAPTGKAAARVTESIRRELEKMPLAGSMR
SSLPGEAATLHRLLGSRPGSRLYAYNRNNPLPADIVVVDEASMIDLEMMAALLDALAEKT
QLILLGDKDQLASVEAGFVMGNLCRGVGENVYHQDTLEWIARQSGEIIDAAAALDANPLH
QQIVMLRHSHRFDGDSGIGRLAQAVNAGDDTGAIWQAHTDIEQMQFQNAHDVRLRMLVGG
ADAEGSKPGYAYYLATLRATRPQDQAGRQAYDAWAGSVLDSFGRFQLLCALRAGPWGGDA
LNRSVKQWLFPEHAQGDWYEGRPVMVMRNDYSLDLMNGDIGIALQDGRGRLAVVFRQPDG
HIRWISPGRLSDVETAFAITVHKSQGSEFDHVVLVIPGSNSALLTRELIYTGITRAKKRF
TLLYGDEAVFRRALQTRALRCGGLETLLAHHDNG
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgcatatatcagctgaatcggtgttgcactttgtagacgagagtttgaaaagcggcgag
ctgagccggctggatcgcgcatttatgctgtttttgcgcaatatcgacaccaatgccagc
ccgctggtttggctggctggagcctgggcgagcaggcaggtgagcagggggcatgtgtgc
ctgaatcttgaggcttgggcgaataacggattggaagagagcgccttgcaaagctgcacc
ctggatcagtggctggatgcattgcggcatagcctgctggtaggcgcaggcgcaggtaat
acgccgctggtactggacgggcgcaacctctatctgcggcgttattggcaatacgaacaa
tccgtcgccgcagcggttaaacaacgcgccgctcagccggcattgaagctgcccggcgat
ttgcgcgcgcgcttgaaccggctgttttatgacggcacgcaaaaaccggattggcagaaa
attgcctgtgcagttgcgttgcgcgcgcgcttctccattattaccggcggaccgggtacg
ggtaaaacgagcacggtgacgcgtctgctggctttgctggttgatatagccggcaacagc
gaaaatggcgggcgcaaacctattatccgcttggctgccccaaccggcaaggccgctgcg
cgggtcacggagtcgatacgccgcgagttggaaaaaatgcccctagctggttccatgcgc
tccagtctgccgggagaagccgctactttgcatcgcttattgggcagccgtcccgggtcg
agattatatgcctacaaccgcaacaacccgctgcccgcggatatcgtcgttgtcgatgaa
gcgtcgatgatcgacctggaaatgatggcggcattgctggatgctttggcggaaaaaacg
caactgatcctgttgggcgacaaggatcagttggcttcggtggaggcgggcttcgtgatg
ggcaacctgtgccgcggggtgggggagaacgtttaccatcaggacacgctggaatggata
gcacggcagagcggcgaaatcattgacgcggctgctgcgcttgacgctaatccattgcac
cagcagatcgtgatgctgcgccacagccatcgcttcgacggcgacagcggaatcggacgc
ctggcgcaggcagtgaatgcgggtgacgataccggggcgatctggcaggcccataccgat
atcgagcaaatgcaattccagaatgcacatgacgtgcggttacggatgctggttggagga
gcggatgcggaagggagcaaaccgggttacgcttattatctggctacactgcgcgcgacc
cgtccgcaagatcaagcgggccggcaggcttacgacgcctgggccggcagcgtattggac
agtttcggcagatttcagctgctgtgcgcgctgcgtgcggggccttggggaggggatgcg
ctgaaccgcagcgtaaaacaatggctgtttcctgaacatgctcagggcgattggtacgaa
ggccgtccggtgatggtgatgcggaacgattacagcctcgatctgatgaacggtgatatc
ggtattgcgctgcaggatggccggggcaggcttgcggtggtattcaggcagccggatggc
catattagatggatttcacccggacgtttatccgatgtggaaactgcgtttgcgattacc
gtgcataaatcgcaaggctcagaattcgatcacgttgttctggtgatacccggcagcaac
agcgcgttgttgacgcgagaactgatttatacaggcatcacgcgggctaaaaaacgcttc
accctgctttacggcgatgaagctgtatttcgccgggccttgcaaaccagggcgcttcgc
tgcgggggattggagacgctgctggcgcaccacgacaacggatga
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