Candidatus Methylospira mobilis: F6R98_14835
Help
Entry
F6R98_14835 CDS
T06248
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mmob
Candidatus Methylospira mobilis
Pathway
mmob03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mmob00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
F6R98_14835 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmob03021
]
F6R98_14835 (rpoC)
03400 DNA repair and recombination proteins [BR:
mmob03400
]
F6R98_14835 (rpoC)
Enzymes [BR:
mmob01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
F6R98_14835 (rpoC)
Transcription machinery [BR:
mmob03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
F6R98_14835 (rpoC)
DNA repair and recombination proteins [BR:
mmob03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
F6R98_14835 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
QFY45134
UniProt:
A0A5Q0BSH6
LinkDB
All DBs
Position
complement(3268300..3272493)
Genome browser
AA seq
1397 aa
AA seq
DB search
MNFLKRQSQTEEFDGIRISLASPDMIRSWSYGEVKKPETINYRTFKPERDGLFCAKIFGP
VSDYECLCGKYKRLKHRGVICEKCGVEVTLSKVRRERMGHIELASPVAHIWFLKSLPSRI
ALLLDMTLREIERVLYFESFVVIQPGTTPYERGQLLTDDEYNEATQQYGDELSAKMGAEA
IRDMMKTMDLQEEVQRLREEIDATNSETKIKKHTKRLKAIESLISSNNKPEWMVMTVLPV
LPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQESVD
ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPTLKLH
QCGLPKKMALELFKPFIFSKLQFRGQATTIKAAKKMVERESPEVWDILDEVIREHPVMLN
RAPTLHRLGIQAFEPTLVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEARTLM
MATNNILSPANGEPIINPTQDVVLGLYYMSRERVGATGEGMIFSDTDEVLRGYQNHKLDL
QAKVTVRIREVLLDEDGALLPPAVRRVQTTAGRAIIWTIVPEGMSFEMVNQDMTKKAISR
LLNHCYRTLGVKTSVVFADQLMYLGFSYATRAGVSIGFEDMAVPPRKHEIISAAEQEVKE
IQNQYASGLVTDGERYNKVVDIWSHANDQVAKVMMEGLGTEQAVGKDGQVIQQKSFNSIY
MMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLDVLQYFISTHGARKGL
ADTALKTANSGYLTRRLVDVAQDLVITNVDCGTNEGLLMSPLIEGGDVVEPLAERVLGRV
LAEDVLQPGSNNVIVSAGTLLDETWVAVLEDYSVDIVRVRSVITCRNRHGVCASCYGRDL
GRGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRSAAISNVEVKSGGTIKLNNL
KTVENKDGLLVAVSRSGEVSVIDEHGRERERYKIPYGSVLSVKDGSAIRGGQVVVNWDPH
THPVVTEVKGRAQLVDFVDGVTVREQSDEVTGLSSMVVIDPKQRGGAGKELRPLVKLVDD
DGNDILIPSTEIAAQYFLPAGAIIGIRDGDRVEVGDVLARIPQESSKTRDITGGLPRVAD
LFEARKTKDPAILAEATGTISFGKETKGKRRIVITDPAGVMHEAMIPKWRHVTVFEGEHV
EQGETIAEGELTPHDILRLRGVADLASYLVKEIQDVYRLQGVKINDKHIEVIIRQMLRKV
EITSPGDTVFLKGEQVDRARFAEENERVEAEGKIPACYEAILMGITKASLSTESFISAAS
FQETTRVLTEAAIRGLGDKLMGLKENVIVGRLIPAGTGLAYHLSRKDKTRGAEEDVAEAQ
TIDTGEVEAALKQALNM
NT seq
4194 nt
NT seq
+upstream
nt +downstream
nt
attaactttttgaagcgtcagagtcagaccgaagagttcgacggcattcgtatcagtctg
gcttcgcccgacatgatacgttcctggtcgtacggagaggtaaaaaagccggaaaccatt
aattaccgcacctttaaaccggagcgggatggattgttctgtgcaaagattttcgggccg
gtcagcgattacgagtgcttgtgcggcaaatacaaacggcttaaacatcgcggtgttatc
tgcgaaaaatgcggtgtcgaggttacattgtcgaaagtccggcgtgagcgtatgggccat
atcgagctggccagcccggtcgctcacatctggtttttaaagtcgctgccgtcgagaatc
gccctgctgctcgacatgactctgcgtgaaatcgagcgcgtgctttatttcgagtctttt
gtcgtgattcagccgggtactacgccttacgagcgcggtcagttgttgacggatgacgag
tacaacgaagccacgcagcagtacggcgatgagctgtcggccaaaatgggcgccgaagcg
atacgcgacatgatgaaaaccatggatcttcaggaagaagttcagcgtttgcgcgaggaa
atcgatgcgaccaactccgaaaccaagataaagaagcataccaagcgcctgaaggccata
gagtcgctgatcagctctaacaataaaccggaatggatggtcatgaccgtgctgccggta
ttgccgccggaactgcgccctctggtgcctctggatggcggccgttttgctacttccgac
ctgaatgacctctatcgccgcgtcatcaatcgcaacaaccgcctgaagcgcctgctggat
ctgaatgcgccggatatcatcgtgcgtaacgaaaagcgcatgctgcaggaatcggttgat
gctctgctggataacggtcgccgcggccgcgcgattaccggttcaaacaagcgcccgcta
aaatcgcttgccgatatgatcaagggcaagcagggtcgtttccggcagaacctgctgggt
aagcgcgtcgactattccggccgctcggtgatcgtggtcgggccaacgttgaagctgcac
cagtgtggtttgcccaagaaaatggcattggagctgttcaagccgtttattttcagcaag
ctgcagtttcgaggtcaggccacgaccatcaaggcggccaagaaaatggtggaacgcgaa
agtccggaagtatgggatatcctggatgaagtgatacgcgagcatccggttatgctcaac
cgcgctccgaccctgcatcgcctgggtatacaggctttcgaacctaccctggtggaaggc
aaggccatacaattgcatccgctggtttgtaccgcgttcaatgcggatttcgacggcgac
cagatggccgtgcatgttcctttgtcattggaagcgcagctggaagcacgcacgctgatg
atggcgaccaataatatcctttcgccggccaacggcgagccgatcatcaatcctacccag
gacgtggtgctgggtttgtattacatgagccgggagcgcgtcggtgcaaccggagaaggc
atgattttctcggacaccgacgaagttttgcgcggttatcagaatcacaagctcgatttg
caggccaaggtaacggtacgtatacgcgaagtgctgctcgacgaggacggcgcgctgctg
ccgccggctgtgcgccgggttcaaaccacggcggggcgcgctattatctggaccatcgtt
cccgagggaatgagcttcgagatggtgaatcaggatatgaccaagaaggccatatcgcgt
ctgctcaatcattgttaccgcacgctgggcgtaaagacttccgtggtgttcgccgatcag
ctgatgtatctgggtttctcttatgcgaccagggccggcgtatccatcggtttcgaggac
atggcggtgccgccgcgcaagcatgagattatttcggcagccgaacaggaagttaaggag
attcagaaccagtatgcatcgggactggtaactgatggcgagcgttacaacaaggtggtc
gatatctggtctcatgccaatgatcaggtggctaaggtcatgatggaaggactgggtacc
gagcaggctgtcggcaaggacggtcaggtgattcagcagaaatcattcaattccatctac
atgatggcggattccggcgcgcgaggctctgcggcgcagatacgtcagcttgccggtatg
cgcggcctgatggcgaaaccggacggttccatcatcgagacgccgatcaccgccaacttc
cgcgaaggtctggacgtattgcaatacttcatttccacacacggcgcgcgcaagggtttg
gccgatactgctctgaaaaccgcgaattcgggttatctgacgcgccgtctggtcgacgtg
gcccaggacctggtaatcactaatgtcgattgcggcaccaacgaaggtttgctgatgtcc
ccgctgatcgaaggcggcgacgttgtcgaacctctggccgaacgcgtattggggcgcgta
ctggcggaggacgtgctgcaaccgggcagcaacaacgttattgtctcggcagggactttg
ctggacgaaacctgggtggcggtgctggaagattacagcgtggatatagtcagggtacgt
tcggtcattacctgccggaatcgtcatggcgtatgcgcttcctgctatgggcgtgatctg
ggccgtggacaccaggtcaatatcggcgaggccgtcggcgttattgctgctcagtccatc
ggtgagccgggtacgcagttgaccatgcgaacgttccatatcggcggcgccgcatcgcgt
tcggcggcgatcagcaatgtcgaggttaaatccggcggcaccatcaagcttaacaacctg
aagacggtagagaacaaggatggtttgctggtggcggtttcccggtcgggcgaagtcagc
gttattgatgagcatggacgcgagcgcgagcgctacaagataccttacggttccgtgctt
tcggtgaaggacggctcagcgattcgaggcgggcaggtcgtggtgaactgggacccgcat
acgcatcctgttgttaccgaagtgaaaggccgcgctcaactggttgactttgtcgatggc
gttaccgtgcgcgagcagtcggatgaagtaaccggattaagctccatggtggttatcgat
cctaaacagcgtggcggcgcgggcaaagagctgcgtccgctggttaaactggtagacgac
gacgggaacgatattctgattccttccacggaaattgccgctcaatatttcctgccggca
ggggctattatcggcatccgcgacggcgatcgagttgaagtgggcgacgtgctggcaaga
attccgcaggagtccagcaaaactcgtgatatcaccggtggtttgccgcgtgttgccgac
ttgttcgaagcgcgcaaaaccaaggatccggccattctggctgaagcgaccggtacgatc
agcttcggtaaggagaccaagggcaaacgccgcatagtcataaccgaccctgcgggcgta
atgcatgaggcgatgataccgaaatggcgtcacgttaccgtgtttgaaggcgaacatgtc
gagcaaggcgaaaccatagctgaaggcgagctgacgccgcacgatattttgagactgaga
ggcgtagccgatctggcttcttatctggttaaggaaatacaggatgtctatcgtttgcaa
ggcgtaaaaatcaacgacaaacacattgaggtgatcatacgtcaaatgctgcgcaaggtt
gaaattacgtcgccgggtgatactgtttttcttaagggagagcaggttgatcgcgcccga
tttgctgaagaaaacgagcgcgtagaggctgaaggtaaaattccggcctgttatgaggcg
attttgatgggaattaccaaggcgtcgctttcaacggaatcctttatttcggcagcttcg
ttccaggaaacgacacgtgtgctgaccgaagcggcgatacggggattgggtgataaactg
atggggcttaaggaaaatgttatcgtaggacgtttgatacctgcgggcaccggactcgct
taccatctgagccgtaaggataagactcgtggtgcggaagaggatgtagcggaagcgcag
actatcgataccggcgaagtggaagctgctctgaagcaggcgcttaacatgtag
DBGET
integrated database retrieval system
