Candidatus Methylospira mobilis: F6R98_15375
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Entry
F6R98_15375 CDS
T06248
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mmob
Candidatus Methylospira mobilis
Pathway
mmob03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F6R98_15375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmob03019
]
F6R98_15375
03009 Ribosome biogenesis [BR:
mmob03009
]
F6R98_15375
Enzymes [BR:
mmob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
F6R98_15375
Messenger RNA biogenesis [BR:
mmob03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
F6R98_15375
Ribosome biogenesis [BR:
mmob03009
]
Prokaryotic type
rRNA helicases
F6R98_15375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
DUF3475
UvrA_inter
Cas3-like_C_2
LytM_N
Motif
Other DBs
NCBI-ProteinID:
QFY43840
UniProt:
A0A5Q0BJ52
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All DBs
Position
3385887..3387638
Genome browser
AA seq
583 aa
AA seq
DB search
MESTETSFTFSELSISAPLLRAISEIGYETPSPIQAASIPHLLAGHDLLGQAQTGTGKTA
AFALPILNAVDLNRREPQALVLTPTRELALQVAEAFQSYARHLRDFHILPIYGGQSMDVQ
LRQLRRGAHIIVGTPGRVMDHLRRESLNLDGLRTLVLDEADEMLKMGFIDDVEWILEHTP
PKRQIALFSATMPEAIRKVAKRHLRDPKEARIEAKTATVEAISQRYWLVSGAHKLDALTR
ILEVEDFDAMIIFVRTKVATEELAEKLSARGYSAAALNGDLSQALREKAVERLKKKSLDI
LVATDVAARGLDVERISHVVNYDIPYDTEAYVHRIGRTGRAGRKGEAILFVAPREKRMLG
AIEKATRQRIREMHLPSQQDIADRRVEQFRELVMSTLENEELSFYSNFVQHLAKEQKLTA
LDLAAALTFLAQKERPLLPALKPPASELSHDRGDAKTPRAPRRERPEQAGGEPRENRRRE
KGGDEEGVLYRLEVGRNDGVTPREIVGAIANEAGIPGRFIGHIKLYDEFSTVTLPADTTK
QALKKLEKTWIMGKPIQIRLWADEKAGPSVSIRKPRKKAVSPE
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atggaatcaaccgaaacatccttcacattctcagaactttcgatttccgctcctctactt
cgagcaatcagcgaaatcggttatgaaaccccgtcacctatccaggcggcaagcatccct
caccttctggcgggacacgatctcctgggccaggcgcaaacaggaaccggcaaaaccgcc
gcgtttgcccttcccatactcaatgccgtggatcttaaccggcgcgaaccgcaggctttg
gtgctgactcctacgcgcgaactggcgctgcaggtagcggaggcattccagagctacgct
cgccacctgcgcgacttccatatcctgcccatctacggcggacagtccatggacgtgcag
ctacgtcagctacgtcgcggcgcccatattatcgtcggtacgccgggccgggtaatggat
cacctgcgccgcgaaagcctcaacctggacggtttgcgcacgctggtgctggacgaagcc
gatgaaatgctcaaaatgggctttatcgacgatgtcgagtggatactcgaacatacgccg
cccaagcggcaaatcgcattgttctcggcgaccatgccggaggcgatccgcaaggttgca
aaacgtcatctgcgtgatccaaaggaagcacgcatagaagcgaaaacagcgacggtcgaa
gccatctcgcaacgctattggctggtatccggcgcgcataagctggatgcgctgacgcgc
atcctggaagtcgaagacttcgacgcgatgatcattttcgttcgcaccaaagtcgctacc
gaggaactggcggaaaagttatcggcccgaggttattccgctgcggcgctgaacggcgac
ttgagtcaggcgttgcgtgaaaaagcggtagagcgtctcaagaaaaagtctctggacatc
ctggtcgccaccgacgtcgccgcgcgcggactggacgttgaacgaatcagccacgtcgtg
aactacgacataccttacgatacggaagcctacgtacaccgcataggccgcaccggacgc
gcagggcgcaaaggcgaagccatactgtttgtcgcaccgagggaaaaacgcatgctgggc
gcaatagaaaaagccacgcgccagcgcatacgcgaaatgcatctcccctcccagcaggac
attgccgatcgcagagtcgaacagttccgcgaactggtcatgagtacgctggagaatgaa
gaactaagcttctatagcaacttcgtacagcatcttgccaaggaacaaaaactgactgcg
ctggatctggccgcagcgctgactttcctcgcgcaaaaggaacgcccgctgctgcccgcc
ctcaaacctcccgccagcgaactctctcatgacagaggcgacgccaaaaccccgcgcgcg
ccccgcagagagcgccccgaacaggcgggcggcgaaccgcgcgaaaaccgacggcgcgaa
aaaggcggtgatgaagaaggcgtgttgtaccgtctggaggtcggacgcaacgacggcgtg
acgccacgcgagatagtcggcgcaatcgccaatgaggccggcattccgggacgttttatc
ggacacatcaaactttacgacgaattcagcaccgtcacgcttcctgccgacacgaccaag
caggcgctcaagaaactggaaaaaacctggatcatgggaaaacccatacagatacggctg
tgggcggacgaaaaggcaggcccgagcgtttcaatcaggaaacctagaaaaaaagccgta
tcgcccgagtaa
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