Candidatus Methylospira mobilis: F6R98_17985
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Entry
F6R98_17985 CDS
T06248
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mmob
Candidatus Methylospira mobilis
Brite
KEGG Orthology (KO) [BR:
mmob00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmob03019
]
F6R98_17985 (hrpA)
Enzymes [BR:
mmob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
F6R98_17985 (hrpA)
Messenger RNA biogenesis [BR:
mmob03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
F6R98_17985 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_19
AAA_22
T2SSE
nSTAND3
nSTAND_NTPase5
NACHT
AAA_30
SLFN-g3_helicase
AAA_16
PhoH
AtuA_ferredoxin
Motif
Other DBs
NCBI-ProteinID:
QFY45180
UniProt:
A0A5Q0BN61
LinkDB
All DBs
Position
3971191..3975033
Genome browser
AA seq
1280 aa
AA seq
DB search
MRREQLRLRKTLERFSVDLRKGNSLDEAQWTSLQTRVSASVEQYEARKLSIPALNYAEEL
PVSERKDEILAAVRAHQVVIVCGETGSGKTTQLPKICLEAGRGLSGYIGHTQPRRIAARA
VASRIADELKQPLGAGVGYKVRFNDHTRPDSLIKLMTDGILLAETQQDRFLDQYDTLIVD
EAHERSLNIDFLLGYLRWLLPRRPDLKVVVTSATIDPQRFSRHFFDAPIIEVSGRTYPVD
IRYRPVQTDEEDETEAVEQREILFAVDELYREAPGDILIFLSGEREIRETAEALRKHHPA
DTEILPLYSRLSGSEQERVFKPGKKRRIVLATNVAETSLTVPGIRAVIDTGYARISRYSH
RSKLQRLPIERISQASANQRSGRCGRLGPGICIRLYSEEDYLARPEFTDPEILRTNLAAV
MLQMKALGLGELSDFPFIEPPDERMVRDAVKTLQEINAIDAGRKLTELGRKLSRLPVDPR
LARMLLAASEENSLTEVSIIVSALSLQDPRERPADRQQAADQKHARFKDERSDFLGLLKL
WQDFEKQKHDLSNNKLRKYCQDSFISYLRMREWEEIHQQILQVARGELSLRFNQAPSEYF
EIHRPLLCGLLGNIGFRQEQNEYLGARGLKFQIFPGSALFKARPKWIMAAEQVETSKVYG
RMVAKIEPEWVEACAQHLLKRHYHDPHWEKKAARVAVFERTTLYGLTLVNGRRVPYENID
PVAARQLFIRSALVTMDYDSRAPFFVHNRQLLEEADYLQQKGRRVDLMADEEAIYQFYDE
RIPADINSGVTFESWRRKIEKSNPRFLFMAQQDIARNAEQTVSDRDFPDQCQVGDIPIRL
EYRFEPGNEDDGVTALIPLHQLNPLTRTSFDWLVPGLLAEKVAALIKNLPKTLRKHFVPV
PDYAAQALQRIDPKEPILTRALGKALHAITGVNIPNDAWSEEGLTLHLRMNYAVLDENSV
VIDRSRDLEQLKCKHAQLGVQSFTAIAADVLSLSGCRSWEFGDIAPQVQTQQVQGYPALI
DEGETVGLRIFDTAAAARASHEQGLVRLFRLAMNKELKYLRKNLPFTPASELAYRQLPAH
PYRKDENIREADLRDDTLDRIMATLFVEGAEDIRSESAFNARLAEVRSELVPTGNAVAAS
IGDNLTQYAALSAKMSKLPVAASSDIRQQLSLLLYRGFLTHTPYRALKEIPRYLKALAFR
MEKAPQDPQRDQKLLQELLPYWKAFWDRIAQGKKTTPPERDDFRWMLEEFRVSLFAQSLK
TAYPISAKRIKEAWEKRLKA
NT seq
3843 nt
NT seq
+upstream
nt +downstream
nt
atgcgccgcgagcagcttcggctgcgcaaaaccctggaaagattcagcgtcgacctccgc
aaaggcaacagcctggacgaagcgcaatggacatcgttgcaaacgcgcgtttctgcctcc
gtcgagcaatacgaagcccgcaagctcagcatcccggcgctgaactacgccgaagaactg
ccggtcagcgagcgcaaggatgaaattctggcggcggtgcgcgcgcatcaggtggtgatc
gtctgcggcgaaaccggttccggcaagaccacacagttgccgaagatatgcctggaagcg
ggacgcggcctgagcggttacatcggtcatacccagccgcgccgtatcgccgcgcgcgcg
gtggcgtcgcgcatcgccgacgaactgaaacagccgctgggcgcaggcgtgggttacaag
gtccgcttcaacgatcacacccgccccgacagcctgatcaagctgatgaccgacggcatc
ctgctcgccgaaacccagcaggaccgctttctcgatcaatacgacacgctgattgtcgac
gaggcgcacgaacgcagcctgaacatcgactttctgctcggctatctgcgctggctgctg
ccgcgccgtcccgacttgaaggtagtcgtgacctcggccaccatcgacccgcaacgcttt
tcgcgtcatttcttcgatgcgccgattatcgaggtttccgggcgcacctatccggtcgat
atccgctaccgtccggtgcagaccgacgaggaagacgaaaccgaagcggtcgaacagcgc
gaaattctgttcgctgtggacgagctgtaccgcgaagcgccgggcgatatcctgatcttc
ctgagcggcgagcgcgaaatccgcgagaccgccgaagccttgcgcaagcaccaccccgcc
gacaccgagattctgccgctgtactcgcgcctctccggctccgagcaggagcgcgtattc
aagcccggcaaaaaacgccgcatcgtgctcgccaccaacgtcgcggaaacttcgctgacg
gtgccgggcatccgcgcggtgatcgacaccggctacgcgcgcatcagccgttacagccac
cgcagcaaactgcagcgcctgccgatagaacgcatttcgcaagcctcggccaatcagcgc
tcgggccgctgcgggcgtctggggccgggcatctgcatcaggctgtacagcgaagaagat
tatctggcccgcccggaattcaccgacccggaaatactccgcaccaatctggcggcggtg
atgctgcaaatgaaggcgctgggcctgggcgagctgtccgattttccgtttatcgagccg
ccggacgagcgcatggtgcgcgacgccgtcaagaccctgcaggaaatcaacgcgatagac
gccgggcgcaaactgaccgaactcggacgcaagctgtcgcgccttccggtcgacccgcgt
ctggcgcgcatgctgcttgctgcgtcggaagaaaacagcctgaccgaagtgtcgatcatc
gtctctgcgctcagtctgcaagacccgcgcgaacgccccgccgaccgccagcaggccgcc
gatcagaaacatgcccgcttcaaggacgagcgctcggactttttagggctgctcaagctg
tggcaggatttcgagaagcagaaacacgatctgtccaacaacaagctgcgcaaatattgc
caggacagtttcatctcttatctgcgcatgcgcgaatgggaggaaatccaccagcaaatc
ctgcaagtcgcacgcggcgagctgagtctgcgctttaaccaggcgccttcggaatatttc
gaaattcatcgtccgctgctgtgcggtctgctcggcaatatcggtttccgtcaggaacaa
aacgaatatctcggcgcgcgcgggctgaagttccagatattccccggttcggcgttgttc
aaggcgcgcccgaaatggatcatggcggcggaacaggtggaaacctcgaaagtctacggg
cgcatggtcgccaaaatcgagccggaatgggtggaagcctgtgcgcagcatttgctgaag
cgccattatcacgatccgcactgggagaaaaaagccgcgcgcgtcgcggtgttcgaacgc
accacgctgtacggcctgacgctggttaacggacgccgcgtgccgtatgaaaacatcgat
ccggtcgcggcgcgccagctgttcatccgctcggcgctggtgaccatggattacgacagc
cgtgcgccgtttttcgtgcataaccggcaactgctggaggaagcggattacctgcagcaa
aaaggccgccgcgtcgatttgatggcggacgaggaggcgatttatcagttctacgatgaa
cgcatcccggcagacatcaacagcggcgtgaccttcgaatcgtggcgacgcaagatcgaa
aagagcaatccgcgctttttatttatggcgcagcaggacatcgcgcgcaacgcggagcaa
acggtcagcgatcgggattttcccgatcaatgccaggtgggcgatattcccatccgtctc
gaataccgcttcgagcccggcaacgaggacgacggcgttaccgcgctgattccgctgcat
caactgaatccgctgacccgcacatcgttcgactggctggtacccggcctgttggcggaa
aaagttgcggcgctgatcaagaatctgccgaaaaccctgcgcaagcatttcgtgccggtg
ccggattatgccgcgcaggcactgcagcgcatcgacccgaaagagcctattctgacgcgc
gcattgggaaaagcgctgcacgcgataaccggcgtgaacataccgaacgacgcctggagc
gaggaaggtttgacgctgcatttgcgcatgaattacgccgtactcgatgaaaacagcgtg
gtcatcgaccgttcacgcgatctggaacagctcaaatgcaagcacgcccaactcggcgtg
caaagcttcaccgccatcgccgcagacgtgctgtcgctgagcggctgccgcagttgggaa
ttcggcgacatcgcgccgcaggtgcaaacccagcaggtgcaaggctacccggcgctgatc
gacgaaggcgaaaccgtaggcctgcgcatcttcgacaccgcagccgccgcgcgcgccagt
catgagcagggattggtcaggctgttccgtctggcgatgaacaaggagctgaaatacctg
cgcaaaaacctgccgttcacgcccgcgagcgaactggcttaccggcagcttccggcgcat
ccgtaccgcaaggatgaaaacatacgcgaagccgatctgcgcgacgacacgctggatcgc
atcatggcgacgctgttcgtggaaggcgcggaggatatccgtagcgagagcgctttcaac
gcacgactggcggaagtacgctcggagctggtgccaaccggcaacgcggtagccgccagc
atcggcgacaatctgacgcaatatgcggcgctgtcggcgaaaatgagcaaactccccgtc
gccgccagctccgacatccggcagcaattatcgctgttgctctatcgcggctttttaacg
catacgccttaccgcgcgttgaaggaaattccgcgttatctgaaagccttggcgttcagg
atggaaaaagcgccgcaagatccgcaacgcgatcagaaactgttgcaggaactgctgccc
tattggaaggctttttgggacagaatcgcgcaaggcaagaaaaccacgccgccggagcgc
gatgacttccgctggatgctggaagagttccgcgtttcgctgttcgcgcagtcgctgaaa
accgcgtatccgatttcggccaagcggatcaaggaggcttgggagaagaggttgaaggct
tga
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integrated database retrieval system
