Mycolicibacterium moriokaense: MMOR_54560
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Entry
MMOR_54560 CDS
T06887
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mmor
Mycolicibacterium moriokaense
Pathway
mmor03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mmor00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MMOR_54560 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmor03021
]
MMOR_54560 (rpoC)
03400 DNA repair and recombination proteins [BR:
mmor03400
]
MMOR_54560 (rpoC)
Enzymes [BR:
mmor01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MMOR_54560 (rpoC)
Transcription machinery [BR:
mmor03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MMOR_54560 (rpoC)
DNA repair and recombination proteins [BR:
mmor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MMOR_54560 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
BBX04520
UniProt:
A0AAD1HGU7
LinkDB
All DBs
Position
complement(5530412..5534365)
Genome browser
AA seq
1317 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITAVDEEMRHNELSTLEAEMAVERKAVEDQRDADLEARAQKLEAD
MKELEEEGAKSDVKRKVRDGGEREMRQIRDRAQRELDRLEEIWTTFTKLAPKQLIVDEVL
YRELVDRYGEYFTGAMGAEAIKKLIENFDIDAEAEELRDVIRNGKGQKKLRALKRLKVVA
AFQSNTNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVIGEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLFYLTTMIEGDTGEYT
PAAKDKPETGVYSSPAEAIMAMDRGALSVRAKIKVRLTQLRPPADVEAELFPEGWKPGDA
WTAETTLGRVMFNELLPQAYPFVNEQMHKKVQARIVNDLAERYPMIVVAQTVDKLKDAGF
YWATRSGVTVSMADVLVPPQKQEILERHELEADRIEKQYQRGALNHDERNEALVKIWQNA
TEEVGEALEAHYPEDNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSFR
EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCETERGINVTL
AEKQPDGTLIRDQHIETSAYARTLAQDAVDADGNVIVERGHDLGDPAIEALLAAGITEVK
VRSVLTCGTGTGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGVS
GGSDIVGGLPRVQELFEARIPRDKAPIADVSGRVQLEEGERFYKITIIPDDGGEEVVYDK
LSRRQRLKVFKHDDGTERLLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVKEVQ
EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERGEFETENRRVVAEGGE
PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLQGLKENVIIGKLIP
AGTGINRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
NT seq
3954 nt
NT seq
+upstream
nt +downstream
nt
gtgctagacgtcaacttcttcgatgaactccgtatcggtctcgcgaccgcggacgacatc
cgcaactggtcctacggcgaggtcaagaagccggagaccatcaactaccgcacgctcaag
cccgagaaggacggcctgttctgcgagaagatcttcgggccgactcgcgactgggagtgc
tactgcggcaagtacaagcgtgtccgcttcaagggcatcatctgcgagcgctgcggcgtc
gaggtcactcgcgccaaggtgcgtcgtgagcggatgggccatatcgagctggccgctccc
gtcacgcacatctggtacttcaagggtgtgccttcgcgcctgggctatctgctcgacctg
gccccgaaggatctcgagaagatcatctacttcgcggcctacgtgatcaccgcggtcgac
gaggagatgcgccacaacgagctgtcgacgctcgaggccgagatggccgtcgagcgcaag
gccgtcgaggatcagcgcgacgccgacctggaggcccgggcgcagaagctcgaggccgac
atgaaggagctcgaggaggagggcgccaagtccgacgtcaagcgcaaggtgcgtgacggc
ggcgagcgcgagatgcgtcagatccgcgaccgggcccagcgtgagctggaccggctcgag
gagatctggaccaccttcaccaagctggccccgaagcagctcatcgtcgacgaggtgctc
taccgcgagctcgtcgatcgctacggcgagtacttcaccggcgccatgggcgcggaggcg
atcaagaagctcatcgagaacttcgacatcgacgccgaggccgaagagctgcgtgacgtg
atccgtaacggcaagggccagaagaagcttcgtgctctcaagcgcctgaaggtcgtcgcg
gcgttccagtcgaacaccaactcgccgatgggcatggtgctcgacgcggttccggtgatc
ccgccggagctgcgcccgatggtgcagctcgacggtggccggttcgcgacgtcggacctc
aacgacctgtaccgccgcgtcatcaaccgcaacaaccgactcaagaggctgatcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcgcatgcttcaggagtcggtggatgcg
ctgttcgacaacggccgtcgcggccgtccggtcaccggaccgggcaaccgtccgctgaag
tcgctgtcggatctgttgaagggcaagcagggccggttccgtcagaacctgctcggtaag
cgcgtcgactactcgggccgttcggtcatcgtggtgggcccgcagctcaagctgcaccag
tgcggtctgcccaagctgatggccctggagctgttcaagccgttcgtgatgaagcgtctg
gtcgacctgaaccacgcgcagaacatcaagagcgccaagcggatggtggagcgtcagcgt
ccccaggtgtgggacgtcctcgaagaggtcatcggcgaacacccggtgttgctgaaccgt
gcaccgacgctgcaccgcctcggcatccaggccttcgagccgcagctggtggagggcaag
gcaattcagctgcacccgttggtgtgtgaggcgttcaacgccgacttcgacggtgaccag
atggccgtgcaccttccgctgtcggcggaggcgcaggccgaggctcgcatcctgatgctg
tcgtcgaacaacatcctgtcgcccgcgtcgggccgcccgttggccatgccgcgtctggac
atggtgaccgggttgttctacctgaccaccatgatcgagggcgacaccggcgagtacacg
cctgcggccaaggacaagccggagacgggtgtgtacagctcacccgccgaggcgatcatg
gcgatggaccgcggtgcgttgagcgttcgcgccaagatcaaggtgcggttgacgcagctg
cgtccgcccgccgacgtcgaggccgagctgttcccggagggttggaagccgggcgatgct
tggacggcggagaccacgctgggccgggtgatgttcaacgagcttctcccgcaggcgtat
ccgttcgtcaacgagcagatgcacaagaaggtgcaggcgcggatcgtcaacgatctggcc
gagcgctacccgatgatcgtcgtcgcgcagacggtggacaaactcaaggacgccggcttc
tactgggccacgcgttcgggtgtcaccgtctcgatggccgacgtgcttgtgccgccgcag
aagcaggagatcctggagcgtcacgagctcgaggccgaccggatcgagaagcagtaccag
cgcggcgcgctcaaccacgacgagcgcaacgaggcgttggtgaagatctggcagaacgcc
accgaagaggtcggtgaggcgctggaggcgcactaccccgaggacaacccgatcatcacg
atcgtgaagtcgggcgccacgggcaacctgacccagacccgcacgctggcgggcatgaag
ggtctggtgaccaacccgaagggtgagttcatcccgcgtccgatcaagtcctcgttccgt
gagggcctgacggtgctggagtacttcatcaacacccacggcgcgcgaaagggtctggcg
gacacggcacttcgtaccgctgactcgggttacctgacccgtcgtctggtggacgtcagc
caggacgtcatcgtgcgcgagaccgactgcgagaccgagcgcggcatcaacgtcacgctg
gccgagaagcagcccgacgggacgctgatccgcgatcagcacatcgaaacctcggcctac
gcccgcactttggcgcaggacgcggtcgacgccgacggcaacgtcatcgtcgagcgtggc
cacgacctgggtgacccggcgatcgaggcgctgctggctgccggcatcaccgaggtgaag
gtccgctccgtgctgacctgcggcaccggcaccggcgtgtgcgcgatgtgctacggccgt
tcgatggcgacgggcaagctcgtcgacatcggcgaggcggtcggcatcgttgccgcgcag
tccatcggtgagcccggtacgcagctgaccatgcggacgttccaccagggtggcgtctct
ggtggtagcgacatcgtcggtggtctgcctcgcgtgcaggagctgttcgaggcccgtatc
ccgcgtgacaaggcgccgatcgccgatgtctccggacgcgtgcaactcgaggagggcgag
cgcttctacaagatcaccatcatcccggatgacggtggcgaagaagtggtgtacgacaag
ctgtctcgtcgtcaacgcctgaaggtgttcaagcacgacgacggcaccgagcggttgctg
tccgacggcgaccacgtcgaggtgggtcagcagctgatggaaggctcggccgatccgcac
gaggtgctgcgtgtccagggcccccgcgaggtgcagatccacctcgtcaaggaggttcag
gaggtctaccgcgctcagggcgtgtcgatccacgacaagcacatcgaggtcatcgtccgg
cagatgctgcggcgcgtcacgatcatcgattcgggtgcgacggagttcctgcccggctcg
ctgaccgagcgtggcgagttcgagaccgagaaccgtcgggtcgttgccgagggtggcgag
cccgcggcgggtcgtccggtgctgatgggtatcacgaaggcatcgctggccacggattcg
tggctgtcggcggcgtcgttccaggagaccactcgcgtgctgaccgatgcggcaatcaac
tgccgtagcgacaagctgcagggtttgaaggagaacgtgatcatcggcaagctgatcccg
gccggtaccggcatcaaccgctaccgcaacatccaggtgcagccgaccgaggaagcacgt
gcggccgcgtacacgatcccgtcctacgaggatcagtactacagcccggacttcggccag
gcgaccggtgccgcagtgccgttggacgactacggctacagcgattaccgctaa
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