Methanococcus maripaludis C5: MmarC5_1060
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Entry
MmarC5_1060 CDS
T00491
Name
(GenBank) phosphoesterase, RecJ domain protein
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
mmq
Methanococcus maripaludis C5
Pathway
mmq03410
Base excision repair
mmq03430
Mismatch repair
mmq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mmq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
MmarC5_1060
03430 Mismatch repair
MmarC5_1060
03440 Homologous recombination
MmarC5_1060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mmq03400
]
MmarC5_1060
DNA repair and recombination proteins [BR:
mmq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
MmarC5_1060
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
MmarC5_1060
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MmarC5_1060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
DHH
Motif
Other DBs
NCBI-ProteinID:
ABO35363
UniProt:
A4FYS9
LinkDB
All DBs
Position
complement(1016982..1018277)
Genome browser
AA seq
431 aa
AA seq
DB search
MDIMPIEDIFKFNQITGKIKEKLETYNGLIRIVTHHDPDGLTSGSIVLKTLIRLNKNAQM
TILEHLSKESIEDLAKENDKMFIFCDMGSGQIELINNLGFNAIILDHHPPKVAETEIGNI
LQLNPHIFGANGAKEISASGVCYLIARLFGYYDLAPIAIVGAIGDMQHLPFIGLNKYILN
EARKNRYLSVIKDIVYNCYNLPISKSICYSTQPYIRELSSIDKIKEIFDELKINPEKKGI
TAKEAENLLEYFEKFNKNDELMVDRYEINHKINDAFYLSEVLNACGRKEMTAVGIGILLG
DDECIKHGEKLYIEYKEELIEELKNVKLNSMDNIEYFIGEKGKTGIIAALMVKDKPVLGF
NEQSEIYKVSSRGNKELVEWGLNLSEAMAASKEFGGDGGGHNIASGAALQKNYLNEFLEK
VNEIVGKQLKK
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atggatataatgcctattgaagatatttttaaatttaatcaaattactggaaaaataaaa
gaaaaactagaaacttataatggattaataagaattgtaacacaccacgatcctgatgga
cttacatctggttcaattgtgcttaaaacacttatcaggttaaataaaaatgcacaaatg
actattttggagcatttatcaaaagaatctattgaagatctcgcaaaagaaaacgataaa
atgtttatattttgcgatatgggaagcggtcagattgaattgataaataatcttggattt
aatgcaataattcttgatcaccaccctccaaaagtggccgaaactgaaattggaaatatt
ttacagttaaatccacacatttttggggcaaatggtgcaaaagagatttctgcaagtgga
gtatgttatttaattgcaagattatttggatattatgatttagcacctattgcaattgtt
ggggcaattggggacatgcaacacttgccatttattggattgaataaatatatcttaaat
gaagcaaggaagaaccgttatttgagcgttataaaagatattgtttacaattgctacaat
ttaccaatttcaaagtcgatatgttattcaactcaaccgtatatcagagaattaagtagt
atcgataaaataaaagagatttttgatgaattaaaaataaatcctgaaaaaaaaggaata
actgcaaaagaagcagaaaatttgctcgaatattttgaaaaatttaacaaaaatgacgag
ttaatggttgatagatacgaaataaatcataaaataaacgatgcgttttacctatcagaa
gttttgaatgcatgtggcagaaaagagatgactgcagtcggaattggaattttgcttgga
gatgatgaatgcatcaaacacggcgagaaattatacattgaatacaaggaagaattaatt
gaagaattaaaaaacgtaaaattaaattctatggataatatcgaatattttatcggtgaa
aaaggaaaaaccggaataattgccgcattaatggtaaaagataagccagtactaggattt
aacgagcaaagcgaaatttataaggtttcttcaagaggaaacaaggaactcgttgaatgg
ggactaaatctttcagaagcaatggctgcatcaaaagaatttggtggagatggtggtgga
cacaatatcgcatctggtgcagccctccaaaagaattatttaaatgaatttttggaaaag
gtcaatgaaattgttggtaaacagttgaaaaagtaa
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