Janthinobacterium sp. Marseille: mma_0528
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Entry
mma_0528 CDS
T00561
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mms
Janthinobacterium sp. Marseille
Pathway
mms03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mms00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
mma_0528
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mms03019
]
mma_0528
Enzymes [BR:
mms01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
mma_0528
Messenger RNA biogenesis [BR:
mms03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
mma_0528
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
ABR89617
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All DBs
Position
598777..600318
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AA seq
513 aa
AA seq
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MSPYKRQDLLKNMSDSQPVIQPTTSPAAAVDAHPAVRFEDFGLAPEILRALSDQGYVHPT
PIQAEAIPVVLQGIDVMGAAQTGTGKTAGFSLPIIQLLMAHANSSASPARHPVRALILTP
TRELADQVADNVKAYSRHTPLRSVVVFGGVDMAPQTAALRSGVEIVIATPGRLLDHIQQK
TLNLSQTQILVMDEADRMLDMGFLPDLQRIINLLPKQRQNLMFSATFSPEIKKLAATFLK
DPVTIEVARSNATAENVTQIVYKVEEGDKGDAVSYIIRERGLKQVIVFSNTKIGASRLAR
QLENEGVKASAIHGDKSQAERMAALEAFKNGTIEVLVATDVAARGLDIAELPCVINYDLP
YNAEDYVHRIGRTGRAGASGDAISLYSDKDARLLVDIEKMIKHKFVPAQLAGFVPAGNRA
SERKERSPRRDDSESRGRGSERRESAPREASGGRDPGSRSAYAAPRKEKIDPFFTKPYEP
APSTISEAKPAEQAPAKPPKHKMAALLGGAPKR
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccttacaagaggcaagacctgctaaaaaacatgtctgatagtcagccagtaatc
cagcctactacttcgcccgccgctgcggtcgatgcgcatcctgcagtccgtttcgaagat
ttcggcctggcgccggaaatcctgcgtgccctgagcgatcagggttatgtacacccgacg
ccgatccaggcggaagccatcccggtcgtgctgcaaggcatagacgtcatgggtgcggcg
caaaccggtaccggtaaaaccgccggtttctccctgccgatcattcaattgctgatggcg
catgccaacagtagcgcgtcgccggcgcgccatccggtacgggcgctgatcctgacgcct
acccgtgaattggccgaccaggtggcggataacgtcaaagcctattcgcggcacacgcct
ttgcgttcggtcgtggtgtttggtggtgtcgatatggcgccgcaaaccgcagccctgcgt
tccggtgttgaaatcgtgatcgccacgccgggtcgcctgctcgatcatatccagcaaaaa
acactcaatctttcacagacgcaaatcctcgtcatggatgaagcggatcgcatgctggac
atgggctttttgccagacctgcaacgcatcatcaatctcttgccgaagcagcgccagaac
ctgatgttctccgcgaccttctctccggaaatcaaaaagctggcagctaccttcctgaag
gatccggtcaccattgaagtggcgcgcagcaatgcgaccgcagagaacgtgacgcaaatc
gtctataaggtggaagagggtgacaagggtgatgcggtgtcttacatcatccgcgaacgc
ggcctcaagcaagtcatcgttttttcaaataccaagataggtgcatcgcgcctggcacgc
caactggaaaatgaaggcgtgaaagcgtcggccatccatggcgacaaatcgcaagccgaa
cgtatggctgcactggaagcattcaagaacggcacgatagaagtgctggttgccaccgac
gttgcagcgcgtggtttggatatcgccgaactgccgtgcgtaattaattacgacttgcca
tataacgcggaagattatgtgcatcgtatcggccgtaccggtcgcgccggtgcttccggc
gatgcgatttcgctgtattcggataaggatgcgcgcctgctggttgatatcgaaaagatg
atcaagcacaagttcgtgccggcacaactggcgggcttcgtacctgccggcaaccgtgcc
agcgaacgcaaggaacgcagcccgcgtcgtgatgattcggaatcgcgtggtcgtggttcg
gagcgtcgtgaatcggcaccgcgtgaagcatcgggtggccgtgatccaggcagccgcagc
gcatatgccgcgccacgtaaagaaaagatcgatccattctttaccaagccatatgagccg
gcaccatcgaccatcagcgaagccaaaccggccgagcaggctccggccaagccgccgaag
cacaagatggcggcgttattgggtggtgcacccaagcgttaa
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