Janthinobacterium sp. Marseille: mma_0537
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Entry
mma_0537 CDS
T00561
Symbol
cafA
Name
(GenBank) ribonuclease G (RNAse G) (cytoplasmic axial filament protein)
KO
K08301
ribonuclease G [EC:3.1.26.-]
Organism
mms
Janthinobacterium sp. Marseille
Brite
KEGG Orthology (KO) [BR:
mms00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mms03019
]
mma_0537 (cafA)
03009 Ribosome biogenesis [BR:
mms03009
]
mma_0537 (cafA)
Messenger RNA biogenesis [BR:
mms03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
mma_0537 (cafA)
Ribosome biogenesis [BR:
mms03009
]
Prokaryotic type
rRNA processing factors
mma_0537 (cafA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Phage_tail_fib
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
ABR89103
LinkDB
All DBs
Position
complement(611167..612630)
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AA seq
487 aa
AA seq
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MSEDILVNVTPQETRVALVLQGAVQELHVERTLSRGMAGNIYLGKVVRVLPGMQSAFVDI
GLERAAFLHVADIWDARSHEGPPSSPTPIERVLYDGQAVTVQVIKDPIGTKGARLSTQIS
IAGRMLVYLPQESHIGISQRIENEVEREILREKVQKLILPEEKGGFIIRTMAEDASDGDL
QADVEYLRKTWANITQQAKTKPAPTLLYQDLDLAQRVMRDFVNDETASIQVDSRENYQKL
LQFGELYTPSVLSKLAHYPGERPLFDLYGVEEEIQRALGRRVDLKSGGYLIVDQTEAMTT
IDVNTGSFVNGRNFDDTIFKTNLEASHAIARQLRLRNLGGIMILDFIDMENPEHKSAVLN
ELNRALSRDRTKVSVSGFSALGLVEMTRKRTRESLAHILCEPCPACSGKGQVKTARTICY
EILRELTREAKQFNPREFRILASQVVIDMFLEEESQHLAMLGDFLGKPISLQVETVYHQE
QYDVILM
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaagatattctcgtcaacgtgacgccgcaggaaacccgcgtcgccctggtgttg
caaggtgcggtgcaggaactgcatgtcgaacgtacgctgtcacgcggcatggccggtaat
atttacctcggcaaagtcgtacgcgtactacccggcatgcaatccgcctttgtcgatatc
ggcctcgaacgtgccgccttcctgcacgtcgccgatatctgggatgcccgttcgcacgag
ggaccacccagttcaccgacgccgattgaacgggtgctgtacgacggccaggctgttacc
gtacaagtcatcaaggatccgatagggaccaagggtgcgcgcctgtcgacccagatttcg
attgccggacgcatgctggtctacctgccgcaggaatcgcatatcggcatttcgcaacgc
atcgaaaacgaagtcgaacgcgaaatcctgcgcgaaaaagtacagaaactgatcctgccg
gaagaaaaaggcggcttcatcatccgtaccatggcggaggatgcatccgacggtgacctg
caggccgacgtcgaatacctgcgcaagacctgggcgaatattacccagcaggcaaaaacc
aaacccgcccctaccctgctgtaccaggatcttgatctggcgcagcgtgtgatgcgcgac
ttcgtcaatgacgaaaccgccagcatccaggtcgactcgcgcgaaaactatcaaaaactg
ctgcagttcggtgaactatatacgccatcggtattatcgaaactcgcgcactatccgggt
gaacgtccactcttcgatttgtatggcgtggaagaagaaatccagcgcgccctcggtcgg
cgcgtcgatttgaaatcgggtggttacctgatcgtcgaccagaccgaagcgatgacgacc
atcgatgtgaataccggcagcttcgtcaatggccgtaatttcgacgatacgattttcaaa
accaatctggaagcgtcacacgcgatcgcacgccagctgcgcctgcgcaacctcggcggc
atcatgatcctcgatttcatcgacatggaaaatcctgagcacaagagcgccgtgctgaat
gaattgaaccgcgcactctcgcgtgaccggaccaaggtatcggtttccggattttccgcc
ctgggtctggttgaaatgacacgcaagcgtacgcgtgaatcattggcacatatattgtgc
gaaccctgccctgcatgcagcggcaagggccaggttaaaaccgcacgcaccatctgctat
gaaatcctgcgtgaactcacgcgtgaagcgaaacaattcaacccgcgggaattccgtatt
ctggcttcgcaagtcgtgatcgatatgttcctcgaagaagaatcacagcatttggcgatg
ctgggcgacttcctcggcaaaccgatttcattgcaagtggaaaccgtgtatcaccaggaa
cagtacgacgtcatcctgatgtaa
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