Janthinobacterium sp. Marseille: mma_0562
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Entry
mma_0562 CDS
T00561
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
mms
Janthinobacterium sp. Marseille
Pathway
mms03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mms00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
mma_0562 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mms03400
]
mma_0562 (sbcB)
Enzymes [BR:
mms01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
mma_0562 (sbcB)
DNA repair and recombination proteins [BR:
mms03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
mma_0562 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
mma_0562 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
mma_0562 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
DUF7540
Motif
Other DBs
NCBI-ProteinID:
ABR89104
UniProt:
A6SVF5
LinkDB
All DBs
Position
complement(640729..642159)
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AA seq
476 aa
AA seq
DB search
MSTHTFLWHDYETFGIQPRRDRPAQFAAIRTDAELNEIGEPIMLYCKPANDFLPDPQSCL
ITGITPQTCLERGVPEHEFAAEIEKALSQTGTIGVGYNTIRFDDEVTRFMFWRNLIDPYA
REWQNSCGRWDILDVVRTAYALRPEGINWPKHPDGRPSFRLEQLTAENGIAHEAAHDALS
DVRATIALARLIRERQPKLFDFCLGLHKKDKVAAEIGLPLRRPFLHITGMIPAERGCIAV
VWPLAVHPTNKNEVIVWDLSVDPSELATLDAETIRMRMFSKADALPEGVSRLPIKTIHLN
KSPIVINNLKTLSAEMTEQWGIDIPTALRHAEVAAAAPDMTAIWQDVFYRPQEAAADVDE
DLYGGFVGNNDRRTLQELRALSPEALAQAKPGFSDPRLEEIVWRYRARNFPHTLNEEEQQ
RWEDHRVARLFDGEGGARTIETLFAEIDQLSETADERGEEILGALYDYAEAIAPSR
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgtctacgcatacctttctttggcacgattacgaaaccttcggcatacagccgcgccgt
gatcgcccggcgcagtttgccgcgatccgtaccgatgccgaactcaatgaaatcggcgaa
cccatcatgctgtattgcaagccggcgaatgacttcctgccggatccgcaatcctgcctg
attaccggcatcacgccgcaaacctgcctggagcgcggcgtgcctgaacacgagttcgcc
gctgaaattgaaaaagccctgtcgcaaaccggcaccataggcgtcggctacaacaccata
cgtttcgatgatgaagtcacgcgcttcatgttttggcgcaacctgatcgatccgtatgcg
cgcgaatggcaaaacagttgcggccgctgggatatcctcgatgtggtgcgtactgcatat
gcactgcgtccggaaggcatcaactggcctaaacatccggacggtcgtcccagcttccgc
ctcgaacaattaactgctgaaaatggcattgcgcatgaagcagcgcatgatgcgctatcc
gatgtacgtgccacgattgcgctggcacgcctgatccgtgagcgccaacccaagctgttc
gacttttgcctgggcctgcacaagaaagacaaggtcgccgccgaaatcggcctgccgctg
cgtcgtcccttcctgcacatcaccggcatgataccggccgagcgtggctgtatcgccgta
gtctggccgctggcggtacatccgaccaacaagaatgaagtcatcgtatgggacctgtcg
gtagatccgtccgaactggcgacactggatgcggaaaccatacgcatgcgcatgtttagc
aaggccgatgctttgccggaaggcgtgagccgcctgcccatcaaaaccatccatttgaat
aaatcccctatcgtcatcaacaacctgaagacgctgtcagcggaaatgacggagcaatgg
gggatagatataccgaccgcactgcgacatgcagaagtggccgccgccgcgcccgatatg
acggcgatctggcaggatgtcttttaccggccgcaggaagcggcggccgatgtcgatgaa
gatttatacggcggctttgtcggcaataatgatcgccgtaccttgcaggaattgcgcgcg
ctgtcgccggaagcattggcgcaggccaagccgggcttcagcgatccacgcctggaagaa
atcgtctggcgttaccgcgcccgcaacttcccgcatacgctgaacgaagaagaacagcaa
cgctgggaagaccatcgcgtcgcacgcctgtttgacggtgaaggcggggcccgtacgata
gaaaccctgtttgccgaaatcgaccaattgtccgaaactgcggatgagcgcggcgaagaa
atcctcggtgcgttatacgactatgcggaagccatcgcgcccagccgctag
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